PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
45051-45100 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | INDEL | D16_PLUS | HG002compoundhet | homalt | 73.6842 | 87.5000 | 63.6364 | 59.2593 | 7 | 1 | 7 | 4 | 4 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 87.5000 | 87.5000 | 87.5000 | 78.3784 | 7 | 1 | 7 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l125_m0_e0 | het | 82.3529 | 77.7778 | 87.5000 | 88.8889 | 7 | 2 | 7 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | segdup | hetalt | 87.5000 | 77.7778 | 100.0000 | 93.6937 | 7 | 2 | 7 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 98.9614 | 7 | 0 | 7 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_l150_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.1373 | 7 | 0 | 7 | 0 | 0 | ||
| jli-custom | INDEL | C1_5 | * | * | 0.0000 | 70.0000 | 0.0000 | 0.0000 | 7 | 3 | 0 | 0 | 0 | ||
| jli-custom | INDEL | C6_15 | * | * | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 7 | 0 | 0 | 0 | 0 | ||
| jli-custom | INDEL | C6_15 | * | het | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 7 | 0 | 0 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l150_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 96.5347 | 7 | 0 | 7 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l150_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 95.1724 | 7 | 0 | 7 | 0 | 0 | ||
| jli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 98.5386 | 7 | 0 | 7 | 0 | 0 | ||
| jli-custom | INDEL | D1_5 | tech_badpromoters | het | 93.3333 | 87.5000 | 100.0000 | 58.8235 | 7 | 1 | 7 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l150_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.9655 | 7 | 0 | 7 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 77.7778 | 0.0000 | 96.2963 | 7 | 2 | 0 | 2 | 0 | 0.0000 | |
| jli-custom | INDEL | I6_15 | map_l150_m2_e1 | homalt | 93.3333 | 87.5000 | 100.0000 | 94.9275 | 7 | 1 | 7 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 70.0000 | 53.8462 | 100.0000 | 53.3333 | 7 | 6 | 7 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l100_m0_e0 | het | 58.3333 | 41.1765 | 100.0000 | 96.3636 | 7 | 10 | 6 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l150_m2_e1 | * | 41.1765 | 25.9259 | 100.0000 | 97.8723 | 7 | 20 | 7 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 7 | 0 | 7 | 0 | 0 | ||
| ckim-isaac | SNP | * | map_l100_m0_e0 | hetalt | 60.8696 | 43.7500 | 100.0000 | 79.4118 | 7 | 9 | 7 | 0 | 0 | ||
| ckim-isaac | SNP | * | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.8053 | 7 | 0 | 7 | 0 | 0 | ||
| ckim-isaac | SNP | tv | map_l100_m0_e0 | hetalt | 60.8696 | 43.7500 | 100.0000 | 79.4118 | 7 | 9 | 7 | 0 | 0 | ||
| ckim-isaac | SNP | tv | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.8053 | 7 | 0 | 7 | 0 | 0 | ||
| ckim-vqsr | INDEL | C6_15 | * | * | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 7 | 0 | 0 | 0 | 0 | ||
| ckim-vqsr | INDEL | C6_15 | * | het | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 7 | 0 | 0 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | func_cds | het | 93.3333 | 87.5000 | 100.0000 | 61.1111 | 7 | 1 | 7 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 80.7692 | 87.5000 | 75.0000 | 75.0000 | 7 | 1 | 6 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 70.0000 | 53.8462 | 100.0000 | 41.6667 | 7 | 6 | 7 | 0 | 0 | ||
| ckim-isaac | INDEL | D1_5 | tech_badpromoters | het | 93.3333 | 87.5000 | 100.0000 | 41.6667 | 7 | 1 | 7 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | map_l125_m0_e0 | het | 37.8378 | 24.1379 | 87.5000 | 96.7347 | 7 | 22 | 7 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I16_PLUS | func_cds | het | 87.5000 | 77.7778 | 100.0000 | 46.1538 | 7 | 2 | 7 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 87.5000 | 77.7778 | 100.0000 | 94.8905 | 7 | 2 | 7 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 87.5000 | 77.7778 | 100.0000 | 95.4839 | 7 | 2 | 7 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l150_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 92.6316 | 7 | 0 | 7 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l150_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.8053 | 7 | 0 | 7 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l250_m2_e0 | * | 93.3333 | 87.5000 | 100.0000 | 96.9432 | 7 | 1 | 7 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l250_m2_e1 | * | 93.3333 | 87.5000 | 100.0000 | 97.0588 | 7 | 1 | 7 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 56.2500 | 7 | 0 | 7 | 0 | 0 | ||
| egarrison-hhga | SNP | * | map_l125_m0_e0 | hetalt | 87.5000 | 77.7778 | 100.0000 | 88.1356 | 7 | 2 | 7 | 0 | 0 | ||
| egarrison-hhga | SNP | * | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.8528 | 7 | 0 | 7 | 0 | 0 | ||
| egarrison-hhga | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 82.3529 | 77.7778 | 87.5000 | 91.4894 | 7 | 2 | 7 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | tv | map_l125_m0_e0 | hetalt | 87.5000 | 77.7778 | 100.0000 | 88.1356 | 7 | 2 | 7 | 0 | 0 | ||
| egarrison-hhga | SNP | tv | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.8528 | 7 | 0 | 7 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | map_l150_m0_e0 | * | 93.3333 | 100.0000 | 87.5000 | 98.0723 | 7 | 0 | 7 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l150_m0_e0 | het | 93.3333 | 100.0000 | 87.5000 | 97.5758 | 7 | 0 | 7 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | segdup | hetalt | 87.5000 | 77.7778 | 100.0000 | 92.8000 | 7 | 2 | 9 | 0 | 0 | ||
| ckim-vqsr | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 98.8854 | 7 | 0 | 7 | 0 | 0 | ||
| ckim-vqsr | INDEL | D1_5 | tech_badpromoters | het | 93.3333 | 87.5000 | 100.0000 | 58.8235 | 7 | 1 | 7 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | map_l150_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.0704 | 7 | 0 | 7 | 0 | 0 | ||