PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4451-4500 / 86044 show all | |||||||||||||||
| ckim-vqsr | SNP | ti | HG002compoundhet | * | 98.9109 | 97.9517 | 99.8891 | 36.4634 | 17120 | 358 | 17120 | 19 | 17 | 89.4737 | |
| jmaeng-gatk | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.7960 | 99.6623 | 99.9299 | 57.3191 | 17119 | 58 | 17115 | 12 | 5 | 41.6667 | |
| ckim-gatk | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.7872 | 99.6565 | 99.9183 | 57.2121 | 17118 | 59 | 17114 | 14 | 8 | 57.1429 | |
| ghariani-varprowl | SNP | tv | map_siren | homalt | 99.3038 | 99.2865 | 99.3211 | 57.8404 | 17117 | 123 | 17117 | 117 | 71 | 60.6838 | |
| gduggal-snapfb | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.2980 | 99.6507 | 98.9479 | 58.0370 | 17117 | 60 | 17116 | 182 | 35 | 19.2308 | |
| hfeng-pmm3 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.2445 | 96.0604 | 98.4581 | 67.5236 | 17117 | 702 | 16730 | 262 | 221 | 84.3511 | |
| jlack-gatk | SNP | tv | map_siren | homalt | 99.5956 | 99.2807 | 99.9124 | 53.4780 | 17116 | 124 | 17113 | 15 | 10 | 66.6667 | |
| hfeng-pmm2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.1966 | 96.0492 | 98.3718 | 68.1010 | 17115 | 704 | 16736 | 277 | 229 | 82.6715 | |
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.4684 | 99.6391 | 97.3249 | 58.7610 | 17115 | 62 | 17136 | 471 | 62 | 13.1635 | |
| ndellapenna-hhga | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.7610 | 99.6391 | 99.8833 | 55.2713 | 17115 | 62 | 17116 | 20 | 15 | 75.0000 | |
| jpowers-varprowl | SNP | * | segdup | het | 97.3794 | 98.7931 | 96.0056 | 92.7629 | 17108 | 209 | 17113 | 712 | 6 | 0.8427 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.1535 | 96.7800 | 97.5299 | 57.5288 | 17102 | 569 | 17097 | 433 | 414 | 95.6120 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.1535 | 96.7800 | 97.5299 | 57.5288 | 17102 | 569 | 17097 | 433 | 414 | 95.6120 | |
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.6848 | 99.5401 | 99.8300 | 56.5387 | 17098 | 79 | 17030 | 29 | 9 | 31.0345 | |
| gduggal-snapvard | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 93.0446 | 97.3019 | 89.1441 | 72.7080 | 17094 | 474 | 16957 | 2065 | 141 | 6.8281 | |
| qzeng-custom | SNP | * | segdup | het | 98.3153 | 98.7007 | 97.9329 | 93.6755 | 17092 | 225 | 16961 | 358 | 11 | 3.0726 | |
| gduggal-bwavard | SNP | * | map_l125_m2_e1 | homalt | 98.6568 | 97.4789 | 99.8635 | 68.6528 | 17090 | 442 | 16828 | 23 | 18 | 78.2609 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 86.7164 | 95.8976 | 79.1397 | 59.1322 | 17088 | 731 | 18434 | 4859 | 4632 | 95.3283 | |
| gduggal-bwaplat | SNP | * | map_l100_m2_e1 | homalt | 76.1334 | 61.4729 | 99.9766 | 72.2874 | 17087 | 10709 | 17075 | 4 | 4 | 100.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 96.6952 | 95.8752 | 97.5293 | 67.9232 | 17084 | 735 | 16698 | 423 | 393 | 92.9078 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.0556 | 96.6386 | 97.4762 | 58.8481 | 17077 | 594 | 17071 | 442 | 432 | 97.7376 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.0556 | 96.6386 | 97.4762 | 58.8481 | 17077 | 594 | 17071 | 442 | 432 | 97.7376 | |
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.3080 | 99.3771 | 99.2391 | 58.1058 | 17070 | 107 | 17085 | 131 | 66 | 50.3817 | |
| ckim-vqsr | SNP | * | segdup | het | 98.9505 | 98.5621 | 99.3421 | 95.0542 | 17068 | 249 | 17062 | 113 | 4 | 3.5398 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.1803 | 96.5537 | 97.8151 | 57.7486 | 17062 | 609 | 17057 | 381 | 365 | 95.8005 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.1803 | 96.5537 | 97.8151 | 57.7486 | 17062 | 609 | 17057 | 381 | 365 | 95.8005 | |
| gduggal-snapplat | SNP | * | segdup | het | 98.6817 | 98.5044 | 98.8598 | 94.8279 | 17058 | 259 | 17080 | 197 | 17 | 8.6294 | |
| gduggal-snapfb | INDEL | I6_15 | * | * | 76.3979 | 68.7024 | 86.0349 | 35.3787 | 17054 | 7769 | 17786 | 2887 | 2798 | 96.9172 | |
| ltrigg-rtg1 | SNP | ti | HG002compoundhet | * | 98.6394 | 97.4883 | 99.8180 | 33.8383 | 17039 | 439 | 17003 | 31 | 12 | 38.7097 | |
| ciseli-custom | SNP | ti | map_l100_m0_e0 | * | 82.2845 | 78.2555 | 86.7509 | 73.7443 | 17037 | 4734 | 17024 | 2600 | 753 | 28.9615 | |
| ckim-vqsr | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.5470 | 99.1558 | 99.9413 | 57.3410 | 17032 | 145 | 17028 | 10 | 8 | 80.0000 | |
| gduggal-snapplat | SNP | * | map_l125_m0_e0 | * | 91.0834 | 87.8360 | 94.5802 | 84.8287 | 17027 | 2358 | 17032 | 976 | 546 | 55.9426 | |
| mlin-fermikit | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.2029 | 96.8864 | 99.5557 | 62.5968 | 17021 | 547 | 17030 | 76 | 4 | 5.2632 | |
| astatham-gatk | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.5088 | 99.0743 | 99.9471 | 55.8025 | 17018 | 159 | 17015 | 9 | 6 | 66.6667 | |
| gduggal-snapplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 87.6106 | 86.8839 | 88.3495 | 88.3802 | 17011 | 2568 | 17070 | 2251 | 184 | 8.1741 | |
| gduggal-snapplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 87.6106 | 86.8839 | 88.3495 | 88.3802 | 17011 | 2568 | 17070 | 2251 | 184 | 8.1741 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.3219 | 95.4262 | 99.2945 | 64.0832 | 17004 | 815 | 17030 | 121 | 44 | 36.3636 | |
| anovak-vg | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 95.8647 | 96.7839 | 94.9628 | 65.9014 | 17003 | 565 | 17476 | 927 | 381 | 41.1003 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 85.9015 | 77.6154 | 96.1682 | 66.3211 | 16997 | 4902 | 16966 | 676 | 597 | 88.3136 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 85.8608 | 77.6154 | 96.0663 | 66.4017 | 16997 | 4902 | 16973 | 695 | 593 | 85.3237 | |
| gduggal-bwafb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 92.2413 | 93.5539 | 90.9650 | 64.4972 | 16995 | 1171 | 16995 | 1688 | 1649 | 97.6896 | |
| gduggal-bwafb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 92.2413 | 93.5539 | 90.9650 | 64.4972 | 16995 | 1171 | 16995 | 1688 | 1649 | 97.6896 | |
| gduggal-snapplat | SNP | ti | map_l100_m2_e0 | homalt | 96.2308 | 92.8014 | 99.9235 | 62.6446 | 16991 | 1318 | 16974 | 13 | 13 | 100.0000 | |
| ciseli-custom | SNP | * | segdup | het | 95.5747 | 98.0713 | 93.2020 | 92.0353 | 16983 | 334 | 16891 | 1232 | 33 | 2.6786 | |
| gduggal-bwaplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 92.0166 | 86.7307 | 97.9886 | 88.3681 | 16981 | 2598 | 17002 | 349 | 101 | 28.9398 | |
| gduggal-bwaplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 92.0166 | 86.7307 | 97.9886 | 88.3681 | 16981 | 2598 | 17002 | 349 | 101 | 28.9398 | |
| gduggal-bwaplat | SNP | * | segdup | het | 98.4496 | 98.0539 | 98.8484 | 95.2313 | 16980 | 337 | 16996 | 198 | 12 | 6.0606 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 96.7435 | 96.0727 | 97.4237 | 57.9207 | 16977 | 694 | 16979 | 449 | 417 | 92.8731 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 96.7435 | 96.0727 | 97.4237 | 57.9207 | 16977 | 694 | 16979 | 449 | 417 | 92.8731 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.0337 | 96.0444 | 98.0437 | 49.4938 | 16972 | 699 | 18343 | 366 | 341 | 93.1694 | |