PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
44651-44700 / 86044 show all | |||||||||||||||
| asubramanian-gatk | INDEL | D16_PLUS | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 84.0000 | 8 | 0 | 8 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 94.1176 | 88.8889 | 100.0000 | 94.2029 | 8 | 1 | 8 | 0 | 0 | ||
| anovak-vg | INDEL | I6_15 | map_l150_m1_e0 | het | 54.4218 | 53.3333 | 55.5556 | 90.8163 | 8 | 7 | 10 | 8 | 1 | 12.5000 | |
| anovak-vg | INDEL | I6_15 | map_l150_m2_e0 | het | 54.4218 | 53.3333 | 55.5556 | 91.7431 | 8 | 7 | 10 | 8 | 1 | 12.5000 | |
| anovak-vg | INDEL | I6_15 | map_l150_m2_e1 | het | 52.6316 | 50.0000 | 55.5556 | 91.9283 | 8 | 8 | 10 | 8 | 1 | 12.5000 | |
| anovak-vg | SNP | ti | map_l125_m1_e0 | hetalt | 0.0000 | 33.3333 | 0.0000 | 0.0000 | 8 | 16 | 0 | 0 | 0 | ||
| anovak-vg | SNP | ti | map_l125_m2_e0 | hetalt | 0.0000 | 33.3333 | 0.0000 | 0.0000 | 8 | 16 | 0 | 0 | 0 | ||
| anovak-vg | SNP | ti | map_l125_m2_e1 | hetalt | 0.0000 | 33.3333 | 0.0000 | 0.0000 | 8 | 16 | 0 | 0 | 0 | ||
| astatham-gatk | INDEL | C1_5 | * | het | 0.0000 | 88.8889 | 0.0000 | 0.0000 | 8 | 1 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | * | map_l150_m1_e0 | hetalt | 0.0000 | 38.0952 | 0.0000 | 0.0000 | 8 | 13 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | * | map_l150_m2_e0 | hetalt | 0.0000 | 38.0952 | 0.0000 | 0.0000 | 8 | 13 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | * | map_l150_m2_e1 | hetalt | 0.0000 | 34.7826 | 0.0000 | 0.0000 | 8 | 15 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | C1_5 | * | * | 51.8752 | 80.0000 | 38.3817 | 91.6130 | 8 | 2 | 185 | 297 | 25 | 8.4175 | |
| anovak-vg | INDEL | D16_PLUS | func_cds | * | 80.0000 | 66.6667 | 100.0000 | 60.0000 | 8 | 4 | 8 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 62.3377 | 53.3333 | 75.0000 | 92.8571 | 8 | 7 | 6 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l150_m1_e0 | * | 66.6667 | 53.3333 | 88.8889 | 94.7977 | 8 | 7 | 8 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l150_m1_e0 | het | 69.5652 | 57.1429 | 88.8889 | 92.3729 | 8 | 6 | 8 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D1_5 | tech_badpromoters | homalt | 94.1176 | 88.8889 | 100.0000 | 50.0000 | 8 | 1 | 8 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | func_cds | homalt | 80.0000 | 66.6667 | 100.0000 | 57.8947 | 8 | 4 | 8 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 20.5128 | 0.0000 | 0.0000 | 8 | 31 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 21.6216 | 0.0000 | 0.0000 | 8 | 29 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 24.1692 | 17.0213 | 41.6667 | 74.4681 | 8 | 39 | 5 | 7 | 7 | 100.0000 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 30.6087 | 21.6216 | 52.3810 | 47.5000 | 8 | 29 | 11 | 10 | 3 | 30.0000 | |
| anovak-vg | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 66.0377 | 70.0000 | 62.5000 | 99.5059 | 7 | 3 | 5 | 3 | 3 | 100.0000 | |
| anovak-vg | INDEL | C1_5 | * | het | 40.9055 | 77.7778 | 27.7500 | 90.6933 | 7 | 2 | 111 | 289 | 20 | 6.9204 | |
| anovak-vg | INDEL | C6_15 | * | * | 35.2941 | 100.0000 | 21.4286 | 89.7623 | 7 | 0 | 12 | 44 | 5 | 11.3636 | |
| anovak-vg | INDEL | C6_15 | * | het | 31.2500 | 100.0000 | 18.5185 | 88.2096 | 7 | 0 | 10 | 44 | 5 | 11.3636 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 36.8421 | 0.0000 | 0.0000 | 7 | 12 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 65.1163 | 63.6364 | 66.6667 | 99.3328 | 7 | 4 | 6 | 3 | 3 | 100.0000 | |
| anovak-vg | INDEL | D1_5 | tech_badpromoters | het | 93.3333 | 87.5000 | 100.0000 | 22.2222 | 7 | 1 | 7 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | map_l150_m0_e0 | homalt | 93.3333 | 100.0000 | 87.5000 | 93.0435 | 7 | 0 | 7 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 20.8955 | 13.2075 | 50.0000 | 55.5556 | 7 | 46 | 8 | 8 | 2 | 25.0000 | |
| astatham-gatk | INDEL | C6_15 | * | * | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 7 | 0 | 0 | 0 | 0 | ||
| astatham-gatk | INDEL | C6_15 | * | het | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 7 | 0 | 0 | 0 | 0 | ||
| astatham-gatk | INDEL | D16_PLUS | map_l150_m0_e0 | * | 87.5000 | 100.0000 | 77.7778 | 97.1787 | 7 | 0 | 7 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | map_l150_m0_e0 | het | 87.5000 | 100.0000 | 77.7778 | 96.3265 | 7 | 0 | 7 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | segdup | hetalt | 87.5000 | 77.7778 | 100.0000 | 93.1298 | 7 | 2 | 9 | 0 | 0 | ||
| astatham-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 98.7952 | 7 | 0 | 7 | 0 | 0 | ||
| astatham-gatk | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 93.3333 | 87.5000 | 100.0000 | 97.2868 | 7 | 1 | 7 | 0 | 0 | ||
| astatham-gatk | INDEL | D1_5 | tech_badpromoters | het | 93.3333 | 87.5000 | 100.0000 | 58.8235 | 7 | 1 | 7 | 0 | 0 | ||
| astatham-gatk | INDEL | D6_15 | map_l150_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.8905 | 7 | 0 | 7 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | map_l100_m0_e0 | het | 87.5000 | 87.5000 | 87.5000 | 95.7219 | 7 | 1 | 7 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l125_m0_e0 | het | 82.3529 | 77.7778 | 87.5000 | 95.8115 | 7 | 2 | 7 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l125_m1_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 86.5385 | 7 | 1 | 7 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_l125_m2_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 88.8889 | 7 | 1 | 7 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_l125_m2_e1 | hetalt | 93.3333 | 87.5000 | 100.0000 | 89.2308 | 7 | 1 | 7 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_l150_m2_e1 | homalt | 93.3333 | 87.5000 | 100.0000 | 96.1111 | 7 | 1 | 7 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 56.2500 | 7 | 0 | 7 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D16_PLUS | map_l150_m0_e0 | * | 93.3333 | 100.0000 | 87.5000 | 97.8261 | 7 | 0 | 7 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l150_m0_e0 | het | 93.3333 | 100.0000 | 87.5000 | 97.1831 | 7 | 0 | 7 | 1 | 0 | 0.0000 | |