PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
44601-44650 / 86044 show all | |||||||||||||||
| ckim-dragen | INDEL | I6_15 | map_l150_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 96.5957 | 8 | 0 | 8 | 0 | 0 | ||
| ckim-dragen | INDEL | I6_15 | map_l150_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.3757 | 8 | 0 | 8 | 0 | 0 | ||
| ckim-dragen | SNP | ti | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 57.8947 | 8 | 0 | 8 | 0 | 0 | ||
| ckim-dragen | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 100.0000 | 100.0000 | 100.0000 | 91.9192 | 8 | 0 | 8 | 0 | 0 | ||
| ckim-dragen | SNP | ti | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 81.3953 | 8 | 0 | 8 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D16_PLUS | map_l125_m0_e0 | het | 88.8889 | 88.8889 | 88.8889 | 97.8417 | 8 | 1 | 8 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 98.7421 | 8 | 0 | 8 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 55.5556 | 8 | 0 | 8 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | tech_badpromoters | homalt | 94.1176 | 88.8889 | 100.0000 | 46.6667 | 8 | 1 | 8 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 94.1176 | 88.8889 | 100.0000 | 99.3191 | 8 | 1 | 8 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | func_cds | het | 94.1176 | 88.8889 | 100.0000 | 70.3704 | 8 | 1 | 8 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 84.0000 | 8 | 0 | 8 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | map_l125_m1_e0 | het | 84.2105 | 88.8889 | 80.0000 | 95.9184 | 8 | 1 | 8 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | map_l125_m2_e0 | het | 84.2105 | 88.8889 | 80.0000 | 96.5870 | 8 | 1 | 8 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | map_l125_m2_e1 | het | 84.2105 | 88.8889 | 80.0000 | 96.5986 | 8 | 1 | 8 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l250_m0_e0 | homalt | 94.1176 | 88.8889 | 100.0000 | 97.6048 | 8 | 1 | 8 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 46.6667 | 8 | 0 | 8 | 0 | 0 | ||
| asubramanian-gatk | SNP | ti | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 52.9412 | 8 | 0 | 8 | 0 | 0 | ||
| asubramanian-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 100.0000 | 100.0000 | 100.0000 | 93.8776 | 8 | 0 | 9 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.3614 | 8 | 0 | 8 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.4894 | 8 | 0 | 8 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 94.1176 | 88.8889 | 100.0000 | 91.7526 | 8 | 1 | 8 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 82.9787 | 8 | 0 | 8 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I16_PLUS | map_l100_m0_e0 | het | 94.1176 | 100.0000 | 88.8889 | 95.0000 | 8 | 0 | 8 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 46.6667 | 8 | 0 | 8 | 0 | 0 | ||
| bgallagher-sentieon | SNP | * | map_l125_m0_e0 | hetalt | 94.1176 | 88.8889 | 100.0000 | 77.1429 | 8 | 1 | 8 | 0 | 0 | ||
| bgallagher-sentieon | SNP | ti | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 46.6667 | 8 | 0 | 8 | 0 | 0 | ||
| bgallagher-sentieon | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 100.0000 | 100.0000 | 100.0000 | 94.3262 | 8 | 0 | 8 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | map_l125_m0_e0 | hetalt | 94.1176 | 88.8889 | 100.0000 | 77.1429 | 8 | 1 | 8 | 0 | 0 | ||
| astatham-gatk | INDEL | D16_PLUS | HG002compoundhet | homalt | 47.0588 | 100.0000 | 30.7692 | 73.1959 | 8 | 0 | 8 | 18 | 18 | 100.0000 | |
| astatham-gatk | INDEL | D16_PLUS | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 81.3953 | 8 | 0 | 8 | 0 | 0 | ||
| astatham-gatk | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 98.7076 | 8 | 0 | 8 | 0 | 0 | ||
| astatham-gatk | INDEL | D6_15 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.8046 | 8 | 0 | 8 | 0 | 0 | ||
| astatham-gatk | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.9192 | 8 | 0 | 8 | 0 | 0 | ||
| astatham-gatk | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 94.1176 | 88.8889 | 100.0000 | 92.1569 | 8 | 1 | 8 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 83.6735 | 8 | 0 | 8 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | map_l125_m1_e0 | het | 88.8889 | 88.8889 | 88.8889 | 96.0699 | 8 | 1 | 8 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I16_PLUS | map_l125_m2_e0 | het | 88.8889 | 88.8889 | 88.8889 | 96.6543 | 8 | 1 | 8 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I16_PLUS | map_l125_m2_e1 | het | 88.8889 | 88.8889 | 88.8889 | 96.6667 | 8 | 1 | 8 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I1_5 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 46.6667 | 8 | 0 | 8 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 88.8889 | 0.0000 | 98.2759 | 8 | 1 | 0 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | C1_5 | * | het | 0.0000 | 88.8889 | 0.0000 | 0.0000 | 8 | 1 | 0 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D16_PLUS | HG002compoundhet | homalt | 39.0244 | 100.0000 | 24.2424 | 67.9612 | 8 | 0 | 8 | 25 | 25 | 100.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 81.8182 | 8 | 0 | 8 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 98.7118 | 8 | 0 | 8 | 0 | 0 | ||
| astatham-gatk | SNP | ti | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 46.6667 | 8 | 0 | 8 | 0 | 0 | ||
| astatham-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 100.0000 | 100.0000 | 100.0000 | 94.5578 | 8 | 0 | 8 | 0 | 0 | ||
| astatham-gatk | SNP | ti | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 71.4286 | 8 | 0 | 8 | 0 | 0 | ||
| asubramanian-gatk | INDEL | C1_5 | * | * | 0.0000 | 80.0000 | 0.0000 | 77.6571 | 8 | 2 | 0 | 391 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | HG002compoundhet | homalt | 39.0244 | 100.0000 | 24.2424 | 68.2692 | 8 | 0 | 8 | 25 | 23 | 92.0000 | |