PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
44301-44350 / 86044 show all | |||||||||||||||
| egarrison-hhga | INDEL | I6_15 | map_l150_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.3333 | 8 | 0 | 8 | 0 | 0 | ||
| egarrison-hhga | SNP | ti | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 52.9412 | 8 | 0 | 8 | 0 | 0 | ||
| egarrison-hhga | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 84.2105 | 80.0000 | 88.8889 | 97.0000 | 8 | 2 | 8 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C1_5 | * | het | 91.5057 | 88.8889 | 94.2813 | 91.6246 | 8 | 1 | 1220 | 74 | 16 | 21.6216 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 98.7897 | 8 | 0 | 8 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.8367 | 8 | 0 | 8 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.7928 | 8 | 0 | 8 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 94.1176 | 88.8889 | 100.0000 | 92.9825 | 8 | 1 | 8 | 0 | 0 | ||
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 82.6087 | 8 | 0 | 8 | 0 | 0 | ||
| ckim-vqsr | INDEL | I16_PLUS | map_l100_m0_e0 | het | 94.1176 | 100.0000 | 88.8889 | 96.0177 | 8 | 0 | 8 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I1_5 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 46.6667 | 8 | 0 | 8 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 88.8889 | 0.0000 | 98.2456 | 8 | 1 | 0 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I6_15 | map_l125_m0_e0 | het | 94.1176 | 88.8889 | 100.0000 | 96.9582 | 8 | 1 | 8 | 0 | 0 | ||
| ckim-vqsr | SNP | ti | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 55.5556 | 8 | 0 | 8 | 0 | 0 | ||
| ckim-vqsr | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 100.0000 | 100.0000 | 100.0000 | 94.4828 | 8 | 0 | 8 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 64.0000 | 53.3333 | 80.0000 | 81.4815 | 8 | 7 | 8 | 2 | 1 | 50.0000 | |
| ckim-isaac | INDEL | D16_PLUS | map_l100_m1_e0 | het | 26.6667 | 17.3913 | 57.1429 | 93.5484 | 8 | 38 | 8 | 6 | 3 | 50.0000 | |
| ckim-isaac | INDEL | D1_5 | tech_badpromoters | homalt | 94.1176 | 88.8889 | 100.0000 | 27.2727 | 8 | 1 | 8 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | map_l150_m0_e0 | * | 39.0244 | 25.0000 | 88.8889 | 96.4567 | 8 | 24 | 8 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 76.1905 | 61.5385 | 100.0000 | 61.9048 | 8 | 5 | 8 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 88.8889 | 88.8889 | 88.8889 | 91.7431 | 8 | 1 | 8 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 88.8889 | 80.0000 | 100.0000 | 95.0617 | 8 | 2 | 8 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 46.6667 | 8 | 0 | 8 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 60.0000 | 8 | 0 | 8 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 80.0000 | 66.6667 | 100.0000 | 43.7500 | 8 | 4 | 9 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 94.1176 | 88.8889 | 100.0000 | 85.1852 | 8 | 1 | 8 | 0 | 0 | ||
| egarrison-hhga | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.3127 | 8 | 0 | 8 | 0 | 0 | ||
| egarrison-hhga | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.6245 | 8 | 0 | 8 | 0 | 0 | ||
| egarrison-hhga | INDEL | D1_5 | tech_badpromoters | het | 94.1176 | 100.0000 | 88.8889 | 50.0000 | 8 | 0 | 8 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 94.1176 | 100.0000 | 88.8889 | 75.0000 | 8 | 0 | 8 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l150_m1_e0 | * | 76.1905 | 72.7273 | 80.0000 | 87.9518 | 8 | 3 | 8 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l150_m2_e0 | * | 76.1905 | 72.7273 | 80.0000 | 89.4737 | 8 | 3 | 8 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l150_m2_e1 | * | 76.1905 | 72.7273 | 80.0000 | 89.4737 | 8 | 3 | 8 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | C1_5 | * | het | 0.0000 | 88.8889 | 0.0000 | 0.0000 | 8 | 1 | 0 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | HG002compoundhet | homalt | 44.4444 | 100.0000 | 28.5714 | 72.0000 | 8 | 0 | 8 | 20 | 20 | 100.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 82.6087 | 8 | 0 | 8 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | map_l125_m0_e0 | het | 84.2105 | 88.8889 | 80.0000 | 97.1910 | 8 | 1 | 8 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 98.7539 | 8 | 0 | 8 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.6977 | 8 | 0 | 8 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.0000 | 8 | 0 | 8 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 94.1176 | 88.8889 | 100.0000 | 92.2330 | 8 | 1 | 8 | 0 | 0 | ||
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 82.9787 | 8 | 0 | 8 | 0 | 0 | ||
| dgrover-gatk | INDEL | I16_PLUS | map_l100_m0_e0 | het | 94.1176 | 100.0000 | 88.8889 | 95.1351 | 8 | 0 | 8 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 46.6667 | 8 | 0 | 8 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 88.8889 | 0.0000 | 98.3333 | 8 | 1 | 0 | 1 | 0 | 0.0000 | |
| dgrover-gatk | SNP | ti | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 8 | 0 | 8 | 0 | 0 | ||
| dgrover-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 100.0000 | 100.0000 | 100.0000 | 94.5205 | 8 | 0 | 8 | 0 | 0 | ||
| dgrover-gatk | SNP | ti | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 71.4286 | 8 | 0 | 8 | 0 | 0 | ||
| egarrison-hhga | INDEL | * | decoy | * | 88.8889 | 80.0000 | 100.0000 | 99.9914 | 8 | 2 | 8 | 0 | 0 | ||
| egarrison-hhga | INDEL | * | map_l125_m0_e0 | hetalt | 84.2105 | 72.7273 | 100.0000 | 96.6346 | 8 | 3 | 7 | 0 | 0 | ||