PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
44251-44300 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | D16_PLUS | func_cds | * | 69.5652 | 66.6667 | 72.7273 | 47.6190 | 8 | 4 | 8 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 8.5511 | 4.6512 | 52.9412 | 66.0000 | 8 | 164 | 9 | 8 | 3 | 37.5000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 55.1724 | 50.0000 | 61.5385 | 90.5109 | 8 | 8 | 8 | 5 | 5 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 53.3333 | 50.0000 | 57.1429 | 89.8551 | 8 | 8 | 8 | 6 | 5 | 83.3333 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l125_m0_e0 | het | 88.8889 | 88.8889 | 88.8889 | 87.5000 | 8 | 1 | 8 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 72.7273 | 61.5385 | 88.8889 | 95.1872 | 8 | 5 | 16 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | D1_5 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 52.9412 | 8 | 0 | 8 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 88.8889 | 80.0000 | 100.0000 | 93.9850 | 8 | 2 | 16 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I1_5 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 40.0000 | 8 | 0 | 9 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 9.9792 | 5.2980 | 85.7143 | 70.0000 | 8 | 143 | 18 | 3 | 2 | 66.6667 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l100_m0_e0 | * | 76.1905 | 72.7273 | 80.0000 | 91.2281 | 8 | 3 | 8 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 2.5316 | 0.0000 | 0.0000 | 8 | 308 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I1_5 | tech_badpromoters | het | 88.8889 | 100.0000 | 80.0000 | 60.0000 | 8 | 0 | 8 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.2564 | 0.0000 | 0.0000 | 8 | 3112 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I6_15 | map_l125_m0_e0 | het | 57.1429 | 88.8889 | 42.1053 | 92.5490 | 8 | 1 | 8 | 11 | 4 | 36.3636 | |
| gduggal-bwavard | INDEL | I6_15 | tech_badpromoters | * | 64.0000 | 61.5385 | 66.6667 | 62.5000 | 8 | 5 | 8 | 4 | 4 | 100.0000 | |
| gduggal-bwavard | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 90.9091 | 100.0000 | 83.3333 | 97.8947 | 8 | 0 | 5 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | * | map_l125_m0_e0 | hetalt | 64.0000 | 72.7273 | 57.1429 | 96.1111 | 8 | 3 | 4 | 3 | 1 | 33.3333 | |
| eyeh-varpipe | SNP | ti | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 57.6923 | 8 | 0 | 33 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 66.6667 | 100.0000 | 50.0000 | 97.1264 | 8 | 0 | 5 | 5 | 1 | 20.0000 | |
| eyeh-varpipe | SNP | ti | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.0988 | 8 | 0 | 63 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 66.6667 | 50.0000 | 100.0000 | 99.9681 | 8 | 8 | 4 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | map_l150_m0_e0 | hetalt | 94.1176 | 88.8889 | 100.0000 | 97.4790 | 8 | 1 | 3 | 0 | 0 | ||
| gduggal-bwafb | INDEL | C1_5 | * | het | 88.1890 | 88.8889 | 87.5000 | 96.5368 | 8 | 1 | 7 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | func_cds | * | 72.7273 | 66.6667 | 80.0000 | 52.3810 | 8 | 4 | 8 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | C1_5 | * | * | 78.1282 | 80.0000 | 76.3420 | 92.2396 | 8 | 2 | 1607 | 498 | 106 | 21.2851 | |
| gduggal-bwavard | INDEL | C1_5 | * | het | 77.2653 | 88.8889 | 68.3301 | 92.9553 | 8 | 1 | 1068 | 495 | 105 | 21.2121 | |
| gduggal-bwavard | INDEL | D16_PLUS | func_cds | het | 76.1905 | 100.0000 | 61.5385 | 77.1930 | 8 | 0 | 8 | 5 | 1 | 20.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 19.5122 | 17.3913 | 22.2222 | 55.5556 | 8 | 38 | 8 | 28 | 27 | 96.4286 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l125_m0_e0 | het | 69.5652 | 88.8889 | 57.1429 | 96.0114 | 8 | 1 | 8 | 6 | 1 | 16.6667 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 94.1176 | 100.0000 | 88.8889 | 99.5536 | 8 | 0 | 8 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 84.2105 | 80.0000 | 88.8889 | 99.5929 | 8 | 2 | 8 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | D1_5 | tech_badpromoters | het | 69.5652 | 100.0000 | 53.3333 | 51.6129 | 8 | 0 | 8 | 7 | 6 | 85.7143 | |
| gduggal-bwavard | INDEL | D6_15 | map_l125_m0_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 92.0000 | 8 | 4 | 8 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I16_PLUS | * | hetalt | 0.0000 | 0.3813 | 0.0000 | 0.0000 | 8 | 2090 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I16_PLUS | HG002compoundhet | hetalt | 0.0000 | 0.3822 | 0.0000 | 0.0000 | 8 | 2085 | 0 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 48.4848 | 33.3333 | 88.8889 | 88.3117 | 8 | 16 | 8 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l250_m1_e0 | * | 61.5385 | 44.4444 | 100.0000 | 99.0730 | 8 | 10 | 8 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | tech_badpromoters | * | 64.0000 | 47.0588 | 100.0000 | 72.4138 | 8 | 9 | 8 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 61.5385 | 44.4444 | 100.0000 | 77.1429 | 8 | 10 | 8 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 75.7576 | 8 | 0 | 8 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | tech_badpromoters | homalt | 76.1905 | 61.5385 | 100.0000 | 70.3704 | 8 | 5 | 8 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l150_m2_e1 | het | 66.6667 | 50.0000 | 100.0000 | 98.2906 | 8 | 8 | 8 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | tech_badpromoters | * | 76.1905 | 61.5385 | 100.0000 | 70.3704 | 8 | 5 | 8 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 44.4444 | 29.6296 | 88.8889 | 99.4278 | 8 | 19 | 8 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | * | decoy | * | 80.0000 | 80.0000 | 80.0000 | 99.9657 | 8 | 2 | 8 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I1_5 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 46.6667 | 8 | 0 | 8 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 86.2069 | 8 | 0 | 8 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 89.0411 | 8 | 0 | 8 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 89.4737 | 8 | 0 | 8 | 0 | 0 | ||