PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
44051-44100 / 86044 show all | |||||||||||||||
| gduggal-snapvard | INDEL | C1_5 | * | het | 54.5455 | 100.0000 | 37.5000 | 88.8932 | 9 | 0 | 2265 | 3775 | 369 | 9.7748 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 4.6004 | 2.3747 | 73.3333 | 89.3617 | 9 | 370 | 11 | 4 | 2 | 50.0000 | |
| gduggal-snapvard | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 0.0000 | 69.2308 | 0.0000 | 0.0000 | 9 | 4 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I16_PLUS | * | hetalt | 0.0000 | 0.4290 | 0.0000 | 0.0000 | 9 | 2089 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I16_PLUS | HG002compoundhet | hetalt | 0.0000 | 0.4300 | 0.0000 | 0.0000 | 9 | 2084 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 44.5230 | 36.0000 | 58.3333 | 84.0000 | 9 | 16 | 7 | 5 | 4 | 80.0000 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 22.9299 | 13.2353 | 85.7143 | 26.3158 | 9 | 59 | 12 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | INDEL | I6_15 | map_l100_m1_e0 | homalt | 42.8571 | 27.2727 | 100.0000 | 74.0741 | 9 | 24 | 21 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | map_l100_m2_e0 | homalt | 42.8571 | 27.2727 | 100.0000 | 75.5814 | 9 | 24 | 21 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | map_l100_m2_e1 | homalt | 42.8571 | 27.2727 | 100.0000 | 75.5814 | 9 | 24 | 21 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | map_l125_m0_e0 | * | 62.0192 | 60.0000 | 64.1791 | 85.8351 | 9 | 6 | 43 | 24 | 16 | 66.6667 | |
| gduggal-snapvard | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 26.4706 | 56.2500 | 17.3077 | 96.1281 | 9 | 7 | 9 | 43 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | D6_15 | map_l125_m0_e0 | homalt | 85.7143 | 75.0000 | 100.0000 | 90.3226 | 9 | 3 | 9 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | tech_badpromoters | het | 90.0000 | 90.0000 | 90.0000 | 58.3333 | 9 | 1 | 9 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | func_cds | * | 81.8182 | 75.0000 | 90.0000 | 65.5172 | 9 | 3 | 9 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 43.9024 | 39.1304 | 50.0000 | 86.0465 | 9 | 14 | 9 | 9 | 8 | 88.8889 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 45.0000 | 40.9091 | 50.0000 | 82.1782 | 9 | 13 | 9 | 9 | 8 | 88.8889 | |
| ghariani-varprowl | INDEL | I6_15 | map_l100_m0_e0 | homalt | 81.8182 | 75.0000 | 90.0000 | 81.4815 | 9 | 3 | 9 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 85.7143 | 100.0000 | 75.0000 | 97.3684 | 9 | 0 | 9 | 3 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | * | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.0276 | 9 | 0 | 9 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I1_5 | tech_badpromoters | * | 47.3684 | 40.9091 | 56.2500 | 86.0870 | 9 | 13 | 9 | 7 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 17.8218 | 9.7826 | 100.0000 | 82.0000 | 9 | 83 | 9 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 19.5652 | 10.8434 | 100.0000 | 64.0000 | 9 | 74 | 9 | 0 | 0 | ||
| gduggal-snapplat | SNP | * | func_cds | hetalt | 94.7368 | 90.0000 | 100.0000 | 47.0588 | 9 | 1 | 9 | 0 | 0 | ||
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 25.0000 | 33.3333 | 20.0000 | 98.9024 | 9 | 18 | 9 | 36 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | C1_5 | * | * | 35.4772 | 90.0000 | 22.0930 | 85.2234 | 9 | 1 | 19 | 67 | 6 | 8.9552 | |
| gduggal-snapfb | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 73.4694 | 64.2857 | 85.7143 | 95.1389 | 9 | 5 | 6 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 81.8182 | 69.2308 | 100.0000 | 96.7136 | 9 | 4 | 7 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | tech_badpromoters | homalt | 94.7368 | 100.0000 | 90.0000 | 47.3684 | 9 | 0 | 9 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 64.2857 | 47.3684 | 100.0000 | 90.9091 | 9 | 10 | 1 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D6_15 | map_l125_m0_e0 | homalt | 78.2609 | 75.0000 | 81.8182 | 93.9891 | 9 | 3 | 9 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l250_m1_e0 | * | 62.0690 | 50.0000 | 81.8182 | 96.2199 | 9 | 9 | 9 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | tech_badpromoters | * | 66.6667 | 52.9412 | 90.0000 | 54.5455 | 9 | 8 | 9 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 89.4410 | 90.0000 | 88.8889 | 96.1373 | 9 | 1 | 8 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | func_cds | homalt | 75.0000 | 60.0000 | 100.0000 | 30.7692 | 9 | 6 | 9 | 0 | 0 | ||
| gduggal-snapfb | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 10.1449 | 100.0000 | 5.3435 | 81.7294 | 9 | 0 | 7 | 124 | 2 | 1.6129 | |
| gduggal-snapplat | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 16.5275 | 18.0000 | 15.2778 | 83.3333 | 9 | 41 | 11 | 61 | 15 | 24.5902 | |
| gduggal-snapplat | INDEL | * | map_l125_m1_e0 | hetalt | 35.9102 | 22.5000 | 88.8889 | 99.0405 | 9 | 31 | 8 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 36.2460 | 22.8571 | 87.5000 | 74.1935 | 8 | 27 | 7 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | SNP | * | map_l125_m0_e0 | hetalt | 94.1176 | 88.8889 | 100.0000 | 94.7020 | 8 | 1 | 8 | 0 | 0 | ||
| gduggal-snapfb | SNP | ti | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 52.9412 | 8 | 0 | 8 | 0 | 0 | ||
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 2.9851 | 80.0000 | 1.5209 | 74.7722 | 8 | 2 | 8 | 518 | 2 | 0.3861 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 20.3390 | 100.0000 | 11.3208 | 89.1393 | 8 | 0 | 6 | 47 | 1 | 2.1277 | |
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 10.6667 | 88.8889 | 5.6738 | 90.0424 | 8 | 1 | 8 | 133 | 4 | 3.0075 | |
| gduggal-snapfb | SNP | tv | map_l125_m0_e0 | hetalt | 94.1176 | 88.8889 | 100.0000 | 94.7020 | 8 | 1 | 8 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | tech_badpromoters | * | 50.2242 | 47.0588 | 53.8462 | 60.6061 | 8 | 9 | 7 | 6 | 5 | 83.3333 | |
| gduggal-snapvard | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 0.0000 | 42.1053 | 0.0000 | 0.0000 | 8 | 11 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 0.0000 | 42.1053 | 0.0000 | 0.0000 | 8 | 11 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | tech_badpromoters | het | 66.6667 | 100.0000 | 50.0000 | 55.5556 | 8 | 0 | 6 | 6 | 5 | 83.3333 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 13.1148 | 0.0000 | 0.0000 | 8 | 53 | 0 | 0 | 0 | ||