PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
43951-44000 / 86044 show all | |||||||||||||||
| astatham-gatk | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.8525 | 9 | 0 | 9 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | map_l250_m0_e0 | homalt | 94.7368 | 100.0000 | 90.0000 | 96.7742 | 9 | 0 | 9 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.3846 | 9 | 0 | 9 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.4785 | 9 | 0 | 9 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | C1_5 | * | * | 0.0000 | 90.0000 | 0.0000 | 0.0000 | 9 | 1 | 0 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.4370 | 9 | 0 | 9 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D16_PLUS | map_l125_m0_e0 | het | 90.0000 | 100.0000 | 81.8182 | 96.7836 | 9 | 0 | 9 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 43.7500 | 9 | 0 | 9 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.0596 | 9 | 0 | 9 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I16_PLUS | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 62.5000 | 9 | 0 | 9 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I16_PLUS | map_l125_m1_e0 | het | 94.7368 | 100.0000 | 90.0000 | 95.5947 | 9 | 0 | 9 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_l125_m2_e0 | het | 94.7368 | 100.0000 | 90.0000 | 96.3100 | 9 | 0 | 9 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_l125_m2_e1 | het | 94.7368 | 100.0000 | 90.0000 | 96.3235 | 9 | 0 | 9 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.1298 | 9 | 0 | 9 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.5783 | 9 | 0 | 9 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.2880 | 9 | 0 | 9 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I1_5 | map_l250_m0_e0 | homalt | 94.7368 | 100.0000 | 90.0000 | 96.6443 | 9 | 0 | 9 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 100.0000 | 100.0000 | 100.0000 | 95.7143 | 9 | 0 | 9 | 0 | 0 | ||
| bgallagher-sentieon | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 94.7368 | 90.0000 | 100.0000 | 98.2890 | 9 | 1 | 9 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.3368 | 9 | 0 | 9 | 0 | 0 | ||
| anovak-vg | INDEL | I1_5 | tech_badpromoters | homalt | 72.8745 | 69.2308 | 76.9231 | 40.9091 | 9 | 4 | 10 | 3 | 2 | 66.6667 | |
| anovak-vg | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 0.0000 | 17.3077 | 0.0000 | 0.0000 | 9 | 43 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 20.4545 | 0.0000 | 0.0000 | 9 | 35 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I6_15 | map_l100_m0_e0 | homalt | 72.7273 | 75.0000 | 70.5882 | 81.1111 | 9 | 3 | 12 | 5 | 5 | 100.0000 | |
| anovak-vg | INDEL | I6_15 | map_l125_m0_e0 | * | 63.1579 | 60.0000 | 66.6667 | 88.4615 | 9 | 6 | 16 | 8 | 3 | 37.5000 | |
| anovak-vg | INDEL | I6_15 | segdup | hetalt | 0.0000 | 20.0000 | 0.0000 | 0.0000 | 9 | 36 | 0 | 0 | 0 | ||
| anovak-vg | SNP | * | map_l125_m1_e0 | hetalt | 0.0000 | 30.0000 | 0.0000 | 0.0000 | 9 | 21 | 0 | 0 | 0 | ||
| anovak-vg | SNP | * | map_l125_m2_e0 | hetalt | 0.0000 | 30.0000 | 0.0000 | 0.0000 | 9 | 21 | 0 | 0 | 0 | ||
| anovak-vg | SNP | * | map_l125_m2_e1 | hetalt | 0.0000 | 30.0000 | 0.0000 | 0.0000 | 9 | 21 | 0 | 0 | 0 | ||
| anovak-vg | SNP | tv | map_l125_m1_e0 | hetalt | 0.0000 | 30.0000 | 0.0000 | 0.0000 | 9 | 21 | 0 | 0 | 0 | ||
| anovak-vg | SNP | tv | map_l125_m2_e0 | hetalt | 0.0000 | 30.0000 | 0.0000 | 0.0000 | 9 | 21 | 0 | 0 | 0 | ||
| anovak-vg | SNP | tv | map_l125_m2_e1 | hetalt | 0.0000 | 30.0000 | 0.0000 | 0.0000 | 9 | 21 | 0 | 0 | 0 | ||
| astatham-gatk | INDEL | * | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.0820 | 9 | 0 | 9 | 0 | 0 | ||
| astatham-gatk | INDEL | C1_5 | * | * | 0.0000 | 90.0000 | 0.0000 | 0.0000 | 9 | 1 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 70.5882 | 75.0000 | 66.6667 | 99.4646 | 9 | 3 | 6 | 3 | 3 | 100.0000 | |
| anovak-vg | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 53.3898 | 52.9412 | 53.8462 | 99.5165 | 9 | 8 | 7 | 6 | 5 | 83.3333 | |
| anovak-vg | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 27.3141 | 19.1489 | 47.6190 | 61.1111 | 9 | 38 | 10 | 11 | 10 | 90.9091 | |
| anovak-vg | INDEL | D16_PLUS | map_l100_m0_e0 | het | 58.0645 | 47.3684 | 75.0000 | 90.6977 | 9 | 10 | 9 | 3 | 3 | 100.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 65.2850 | 56.2500 | 77.7778 | 92.5620 | 9 | 7 | 7 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 65.2850 | 56.2500 | 77.7778 | 92.7419 | 9 | 7 | 7 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l150_m2_e0 | * | 66.6667 | 52.9412 | 90.0000 | 94.4751 | 9 | 8 | 9 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l150_m2_e0 | het | 69.2308 | 56.2500 | 90.0000 | 91.9355 | 9 | 7 | 9 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l150_m2_e1 | * | 64.2857 | 50.0000 | 90.0000 | 94.5946 | 9 | 9 | 9 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l150_m2_e1 | het | 69.2308 | 56.2500 | 90.0000 | 92.1260 | 9 | 7 | 9 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 44.5986 | 69.2308 | 32.8947 | 40.6250 | 9 | 4 | 25 | 51 | 46 | 90.1961 | |
| anovak-vg | INDEL | D1_5 | segdup | hetalt | 0.0000 | 17.3077 | 0.0000 | 0.0000 | 9 | 43 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 32.5234 | 37.5000 | 28.7129 | 27.3381 | 9 | 15 | 29 | 72 | 60 | 83.3333 | |
| anovak-vg | INDEL | D6_15 | map_l250_m1_e0 | het | 78.2609 | 81.8182 | 75.0000 | 96.9620 | 9 | 2 | 9 | 3 | 2 | 66.6667 | |
| anovak-vg | INDEL | D6_15 | segdup | hetalt | 0.0000 | 18.3673 | 0.0000 | 0.0000 | 9 | 40 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | tech_badpromoters | * | 62.0690 | 52.9412 | 75.0000 | 36.8421 | 9 | 8 | 9 | 3 | 3 | 100.0000 | |