PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
43651-43700 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | SNP | tv | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.2459 | 9 | 0 | 9 | 0 | 0 | ||
| jlack-gatk | INDEL | * | map_l150_m0_e0 | hetalt | 94.7368 | 100.0000 | 90.0000 | 94.8187 | 9 | 0 | 9 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | C1_5 | * | * | 0.0000 | 90.0000 | 0.0000 | 0.0000 | 9 | 1 | 0 | 0 | 0 | ||
| jlack-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 90.0000 | 81.8182 | 100.0000 | 85.5422 | 9 | 2 | 12 | 0 | 0 | ||
| jlack-gatk | INDEL | D16_PLUS | map_l125_m0_e0 | het | 90.0000 | 100.0000 | 81.8182 | 97.4359 | 9 | 0 | 9 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 43.7500 | 9 | 0 | 9 | 0 | 0 | ||
| jlack-gatk | INDEL | I16_PLUS | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 71.8750 | 9 | 0 | 9 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | C1_5 | * | * | 0.0000 | 90.0000 | 0.0000 | 0.0000 | 9 | 1 | 0 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.0233 | 9 | 0 | 9 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D16_PLUS | map_l125_m0_e0 | het | 90.0000 | 100.0000 | 81.8182 | 94.7619 | 9 | 0 | 9 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 43.7500 | 9 | 0 | 9 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.2221 | 9 | 0 | 9 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I16_PLUS | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 59.0909 | 9 | 0 | 9 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I16_PLUS | map_l125_m1_e0 | het | 94.7368 | 100.0000 | 90.0000 | 94.7917 | 9 | 0 | 9 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | map_l125_m2_e0 | het | 94.7368 | 100.0000 | 90.0000 | 95.5752 | 9 | 0 | 9 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | map_l125_m2_e1 | het | 94.7368 | 100.0000 | 90.0000 | 95.6140 | 9 | 0 | 9 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.0397 | 9 | 0 | 9 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.3125 | 9 | 0 | 9 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.0000 | 9 | 0 | 9 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I1_5 | map_l250_m0_e0 | homalt | 94.7368 | 100.0000 | 90.0000 | 96.4158 | 9 | 0 | 9 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | map_l125_m0_e0 | * | 72.0000 | 60.0000 | 90.0000 | 95.5157 | 9 | 6 | 9 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | SNP | * | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.0000 | 9 | 0 | 9 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.0000 | 9 | 0 | 9 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.1351 | 9 | 0 | 9 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | C1_5 | * | * | 0.0000 | 90.0000 | 0.0000 | 0.0000 | 9 | 1 | 0 | 0 | 0 | ||
| hfeng-pmm2 | SNP | * | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.0000 | 9 | 0 | 9 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.0000 | 9 | 0 | 9 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.6429 | 9 | 0 | 9 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | C1_5 | * | * | 0.0000 | 90.0000 | 0.0000 | 0.0000 | 9 | 1 | 0 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.4370 | 9 | 0 | 9 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l125_m0_e0 | het | 90.0000 | 100.0000 | 81.8182 | 95.2174 | 9 | 0 | 9 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.9688 | 9 | 0 | 9 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D16_PLUS | map_l125_m0_e0 | het | 90.0000 | 100.0000 | 81.8182 | 96.1404 | 9 | 0 | 9 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 43.7500 | 9 | 0 | 9 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.2126 | 9 | 0 | 9 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I16_PLUS | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 59.0909 | 9 | 0 | 9 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I16_PLUS | map_l125_m1_e0 | het | 94.7368 | 100.0000 | 90.0000 | 95.1923 | 9 | 0 | 9 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | map_l125_m2_e0 | het | 94.7368 | 100.0000 | 90.0000 | 96.0474 | 9 | 0 | 9 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | map_l125_m2_e1 | het | 94.7368 | 100.0000 | 90.0000 | 96.0784 | 9 | 0 | 9 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.1176 | 9 | 0 | 9 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.3608 | 9 | 0 | 9 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.0352 | 9 | 0 | 9 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I1_5 | map_l250_m0_e0 | homalt | 94.7368 | 100.0000 | 90.0000 | 96.3504 | 9 | 0 | 9 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 62.2642 | 60.0000 | 64.7059 | 96.4876 | 9 | 6 | 11 | 6 | 6 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 58.0645 | 69.2308 | 50.0000 | 25.0000 | 9 | 4 | 9 | 9 | 8 | 88.8889 | |
| eyeh-varpipe | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 72.1519 | 60.0000 | 90.4762 | 95.0237 | 9 | 6 | 19 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 72.1519 | 60.0000 | 90.4762 | 95.1501 | 9 | 6 | 19 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | D1_5 | tech_badpromoters | homalt | 90.0000 | 100.0000 | 81.8182 | 26.6667 | 9 | 0 | 9 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | func_cds | homalt | 85.7143 | 75.0000 | 100.0000 | 58.3333 | 9 | 3 | 10 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 64.2857 | 47.3684 | 100.0000 | 84.9057 | 9 | 10 | 16 | 0 | 0 | ||