PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
43601-43650 / 86044 show all | |||||||||||||||
| dgrover-gatk | INDEL | I16_PLUS | map_l125_m1_e0 | het | 94.7368 | 100.0000 | 90.0000 | 95.7265 | 9 | 0 | 9 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l125_m2_e0 | het | 94.7368 | 100.0000 | 90.0000 | 96.4286 | 9 | 0 | 9 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l125_m2_e1 | het | 94.7368 | 100.0000 | 90.0000 | 96.4413 | 9 | 0 | 9 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.1935 | 9 | 0 | 9 | 0 | 0 | ||
| dgrover-gatk | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.3125 | 9 | 0 | 9 | 0 | 0 | ||
| dgrover-gatk | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.9459 | 9 | 0 | 9 | 0 | 0 | ||
| dgrover-gatk | INDEL | I1_5 | map_l250_m0_e0 | homalt | 94.7368 | 100.0000 | 90.0000 | 96.9231 | 9 | 0 | 9 | 1 | 1 | 100.0000 | |
| dgrover-gatk | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 100.0000 | 100.0000 | 100.0000 | 95.8333 | 9 | 0 | 9 | 0 | 0 | ||
| dgrover-gatk | SNP | * | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 77.5000 | 9 | 0 | 9 | 0 | 0 | ||
| dgrover-gatk | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 94.7368 | 90.0000 | 100.0000 | 98.3114 | 9 | 1 | 9 | 0 | 0 | ||
| dgrover-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.3368 | 9 | 0 | 9 | 0 | 0 | ||
| dgrover-gatk | SNP | tv | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 77.5000 | 9 | 0 | 9 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l125_m1_e0 | het | 46.1538 | 30.0000 | 100.0000 | 96.7611 | 9 | 21 | 8 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l125_m2_e0 | het | 46.1538 | 30.0000 | 100.0000 | 97.0803 | 9 | 21 | 8 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l125_m2_e1 | het | 46.1538 | 30.0000 | 100.0000 | 97.1326 | 9 | 21 | 8 | 0 | 0 | ||
| ckim-isaac | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 85.7143 | 75.0000 | 100.0000 | 76.9231 | 9 | 3 | 9 | 0 | 0 | ||
| ckim-isaac | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 85.7143 | 75.0000 | 100.0000 | 76.9231 | 9 | 3 | 9 | 0 | 0 | ||
| ckim-vqsr | INDEL | C1_5 | * | * | 0.0000 | 90.0000 | 0.0000 | 0.0000 | 9 | 1 | 0 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.4082 | 9 | 0 | 9 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.1613 | 9 | 0 | 9 | 0 | 0 | ||
| dgrover-gatk | INDEL | C1_5 | * | * | 0.0000 | 90.0000 | 0.0000 | 0.0000 | 9 | 1 | 0 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.2836 | 9 | 0 | 9 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 43.7500 | 9 | 0 | 9 | 0 | 0 | ||
| egarrison-hhga | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.6429 | 9 | 0 | 9 | 0 | 0 | ||
| egarrison-hhga | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.7346 | 9 | 0 | 9 | 0 | 0 | ||
| egarrison-hhga | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.3710 | 9 | 0 | 9 | 0 | 0 | ||
| egarrison-hhga | INDEL | I1_5 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.2810 | 9 | 0 | 9 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C1_5 | * | * | 91.3266 | 90.0000 | 92.6929 | 92.2121 | 9 | 1 | 2499 | 197 | 109 | 55.3299 | |
| hfeng-pmm3 | INDEL | D1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 43.7500 | 9 | 0 | 9 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.1045 | 9 | 0 | 9 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I16_PLUS | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 57.1429 | 9 | 0 | 9 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I16_PLUS | map_l125_m1_e0 | het | 94.7368 | 100.0000 | 90.0000 | 93.6709 | 9 | 0 | 9 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l125_m2_e0 | het | 94.7368 | 100.0000 | 90.0000 | 94.7644 | 9 | 0 | 9 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l125_m2_e1 | het | 94.7368 | 100.0000 | 90.0000 | 94.7917 | 9 | 0 | 9 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.5252 | 9 | 0 | 9 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.8571 | 9 | 0 | 9 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.6731 | 9 | 0 | 9 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I1_5 | map_l250_m0_e0 | homalt | 94.7368 | 100.0000 | 90.0000 | 96.0474 | 9 | 0 | 9 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | SNP | * | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.2459 | 9 | 0 | 9 | 0 | 0 | ||
| jlack-gatk | INDEL | I16_PLUS | map_l125_m1_e0 | het | 94.7368 | 100.0000 | 90.0000 | 96.7638 | 9 | 0 | 9 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_l125_m2_e0 | het | 94.7368 | 100.0000 | 90.0000 | 97.1510 | 9 | 0 | 9 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_l125_m2_e1 | het | 94.7368 | 100.0000 | 90.0000 | 97.1510 | 9 | 0 | 9 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_l150_m1_e0 | * | 85.7143 | 81.8182 | 90.0000 | 97.7679 | 9 | 2 | 9 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_l150_m2_e0 | * | 85.7143 | 81.8182 | 90.0000 | 97.9381 | 9 | 2 | 9 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_l150_m2_e1 | * | 85.7143 | 81.8182 | 90.0000 | 97.9381 | 9 | 2 | 9 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.1558 | 9 | 0 | 9 | 0 | 0 | ||
| jlack-gatk | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.8716 | 9 | 0 | 9 | 0 | 0 | ||
| jlack-gatk | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.4286 | 9 | 0 | 9 | 0 | 0 | ||
| jlack-gatk | INDEL | I1_5 | map_l250_m0_e0 | homalt | 94.7368 | 100.0000 | 90.0000 | 96.8750 | 9 | 0 | 9 | 1 | 1 | 100.0000 | |
| jlack-gatk | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 100.0000 | 100.0000 | 100.0000 | 95.6098 | 9 | 0 | 9 | 0 | 0 | ||