PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4301-4350 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | I1_5 | HG002complexvar | het | 96.6423 | 95.7777 | 97.5227 | 51.7717 | 17421 | 768 | 17282 | 439 | 429 | 97.7221 | |
| gduggal-snapfb | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 85.6403 | 99.1633 | 75.3631 | 71.5296 | 17421 | 147 | 17540 | 5734 | 127 | 2.2149 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 58.9492 | 55.4636 | 62.9024 | 64.8301 | 17420 | 13988 | 17390 | 10256 | 9749 | 95.0566 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 58.9492 | 55.4636 | 62.9024 | 64.8301 | 17420 | 13988 | 17390 | 10256 | 9749 | 95.0566 | |
| egarrison-hhga | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.4577 | 99.1576 | 99.7596 | 63.2532 | 17420 | 148 | 17430 | 42 | 21 | 50.0000 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 95.6374 | 95.8769 | 95.3990 | 63.4546 | 17417 | 749 | 17417 | 840 | 435 | 51.7857 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 95.6374 | 95.8769 | 95.3990 | 63.4546 | 17417 | 749 | 17417 | 840 | 435 | 51.7857 | |
| dgrover-gatk | SNP | * | map_l125_m2_e1 | homalt | 99.6110 | 99.3269 | 99.8967 | 66.5258 | 17414 | 118 | 17414 | 18 | 13 | 72.2222 | |
| ckim-dragen | SNP | * | map_l125_m2_e1 | homalt | 99.5683 | 99.3212 | 99.8166 | 63.9224 | 17413 | 119 | 17418 | 32 | 29 | 90.6250 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 95.5056 | 97.7103 | 93.3982 | 67.8398 | 17411 | 408 | 17274 | 1221 | 1162 | 95.1679 | |
| rpoplin-dv42 | SNP | ti | HG002compoundhet | * | 99.6565 | 99.5938 | 99.7193 | 35.2092 | 17407 | 71 | 17405 | 49 | 42 | 85.7143 | |
| ckim-isaac | SNP | * | map_l150_m2_e0 | * | 70.6023 | 54.6496 | 99.7079 | 77.9961 | 17407 | 14445 | 17408 | 51 | 12 | 23.5294 | |
| gduggal-snapvard | INDEL | I1_5 | HG002complexvar | het | 90.2347 | 95.7007 | 85.3594 | 58.5913 | 17407 | 782 | 17730 | 3041 | 2197 | 72.2460 | |
| gduggal-bwaplat | SNP | tv | map_l100_m2_e1 | * | 81.3480 | 68.8368 | 99.4174 | 84.4949 | 17404 | 7879 | 17405 | 102 | 20 | 19.6078 | |
| rpoplin-dv42 | SNP | * | map_l125_m2_e1 | homalt | 99.5110 | 99.2471 | 99.7764 | 69.2363 | 17400 | 132 | 17400 | 39 | 38 | 97.4359 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 94.9231 | 95.7613 | 94.0995 | 63.0798 | 17396 | 770 | 17399 | 1091 | 598 | 54.8121 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 94.9231 | 95.7613 | 94.0995 | 63.0798 | 17396 | 770 | 17399 | 1091 | 598 | 54.8121 | |
| asubramanian-gatk | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.9673 | 98.9982 | 98.9364 | 66.6862 | 17392 | 176 | 17395 | 187 | 18 | 9.6257 | |
| ndellapenna-hhga | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.3259 | 98.9526 | 99.7019 | 63.0961 | 17384 | 184 | 17391 | 52 | 20 | 38.4615 | |
| anovak-vg | SNP | * | map_l150_m1_e0 | het | 75.5953 | 89.9876 | 65.1719 | 80.5681 | 17382 | 1934 | 17193 | 9188 | 2064 | 22.4641 | |
| asubramanian-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 96.8256 | 97.5251 | 96.1361 | 70.1065 | 17378 | 441 | 18561 | 746 | 415 | 55.6300 | |
| gduggal-bwafb | SNP | * | map_l125_m2_e1 | homalt | 99.4990 | 99.1216 | 99.8793 | 70.3837 | 17378 | 154 | 17378 | 21 | 13 | 61.9048 | |
| astatham-gatk | SNP | * | map_l125_m2_e1 | homalt | 99.4760 | 99.0703 | 99.8850 | 66.1765 | 17369 | 163 | 17369 | 20 | 16 | 80.0000 | |
| jpowers-varprowl | INDEL | I1_5 | HG002complexvar | het | 94.3417 | 95.4478 | 93.2609 | 57.7585 | 17361 | 828 | 17340 | 1253 | 1221 | 97.4461 | |
| gduggal-snapfb | INDEL | I1_5 | HG002complexvar | het | 93.2070 | 95.4203 | 91.0940 | 55.8992 | 17356 | 833 | 18135 | 1773 | 467 | 26.3395 | |
| gduggal-snapvard | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 88.6909 | 97.1990 | 81.5523 | 71.2536 | 17351 | 500 | 17263 | 3905 | 147 | 3.7644 | |
| hfeng-pmm2 | SNP | * | map_l125_m2_e0 | homalt | 99.8130 | 99.8158 | 99.8101 | 69.0538 | 17343 | 32 | 17343 | 33 | 14 | 42.4242 | |
| eyeh-varpipe | SNP | * | map_l125_m2_e0 | homalt | 99.8542 | 99.8158 | 99.8925 | 71.0277 | 17343 | 32 | 16728 | 18 | 10 | 55.5556 | |
| hfeng-pmm1 | SNP | * | map_l125_m2_e0 | homalt | 99.8100 | 99.7928 | 99.8273 | 69.0265 | 17339 | 36 | 17339 | 30 | 12 | 40.0000 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.1551 | 97.3006 | 99.0247 | 63.5436 | 17338 | 481 | 17362 | 171 | 64 | 37.4269 | |
| hfeng-pmm3 | SNP | * | map_l125_m2_e0 | homalt | 99.7985 | 99.7755 | 99.8215 | 68.9465 | 17336 | 39 | 17336 | 31 | 13 | 41.9355 | |
| eyeh-varpipe | SNP | ti | HG002compoundhet | * | 97.7572 | 99.1589 | 96.3946 | 39.7398 | 17331 | 147 | 12860 | 481 | 101 | 20.9979 | |
| egarrison-hhga | SNP | * | map_l125_m2_e0 | homalt | 99.8127 | 99.7007 | 99.9250 | 68.9614 | 17323 | 52 | 17323 | 13 | 13 | 100.0000 | |
| ltrigg-rtg1 | SNP | * | map_l125_m2_e0 | homalt | 99.7839 | 99.6604 | 99.9077 | 68.1589 | 17316 | 59 | 17317 | 16 | 16 | 100.0000 | |
| gduggal-bwafb | SNP | ti | HG002compoundhet | * | 98.0359 | 99.0731 | 97.0203 | 40.7433 | 17316 | 162 | 17387 | 534 | 136 | 25.4682 | |
| hfeng-pmm3 | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.2263 | 98.5599 | 99.9019 | 64.0348 | 17315 | 253 | 17306 | 17 | 4 | 23.5294 | |
| raldana-dualsentieon | SNP | * | map_l125_m2_e0 | homalt | 99.7723 | 99.6317 | 99.9134 | 65.2834 | 17311 | 64 | 17311 | 15 | 11 | 73.3333 | |
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 97.0989 | 95.1988 | 99.0764 | 32.0722 | 17310 | 873 | 17379 | 162 | 93 | 57.4074 | |
| astatham-gatk | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.2005 | 98.5314 | 99.8788 | 66.3539 | 17310 | 258 | 17301 | 21 | 11 | 52.3810 | |
| raldana-dualsentieon | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.9932 | 98.5200 | 99.4710 | 64.4487 | 17308 | 260 | 17299 | 92 | 10 | 10.8696 | |
| hfeng-pmm1 | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.1947 | 98.5087 | 99.8903 | 63.5767 | 17306 | 262 | 17297 | 19 | 5 | 26.3158 | |
| ckim-gatk | SNP | ti | HG002compoundhet | * | 99.4312 | 99.0159 | 99.8500 | 36.2044 | 17306 | 172 | 17306 | 26 | 21 | 80.7692 | |
| bgallagher-sentieon | SNP | * | map_l125_m2_e0 | homalt | 99.7291 | 99.5741 | 99.8845 | 66.0253 | 17301 | 74 | 17301 | 20 | 15 | 75.0000 | |
| ghariani-varprowl | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 94.4227 | 98.4802 | 90.6863 | 72.2353 | 17301 | 267 | 17390 | 1786 | 11 | 0.6159 | |
| jli-custom | SNP | * | map_l125_m2_e0 | homalt | 99.7463 | 99.5741 | 99.9191 | 65.3928 | 17301 | 74 | 17301 | 14 | 13 | 92.8571 | |
| ltrigg-rtg2 | SNP | ti | HG002compoundhet | * | 99.3879 | 98.9873 | 99.7918 | 33.3089 | 17301 | 177 | 17255 | 36 | 13 | 36.1111 | |
| ltrigg-rtg2 | SNP | * | map_l125_m2_e0 | homalt | 99.7578 | 99.5741 | 99.9422 | 65.9494 | 17301 | 74 | 17302 | 10 | 9 | 90.0000 | |
| cchapple-custom | SNP | ti | HG002compoundhet | * | 99.2669 | 98.9816 | 99.5539 | 35.4095 | 17300 | 178 | 17406 | 78 | 64 | 82.0513 | |
| ndellapenna-hhga | SNP | * | map_l125_m2_e0 | homalt | 99.7405 | 99.5626 | 99.9191 | 67.9668 | 17299 | 76 | 17299 | 14 | 13 | 92.8571 | |
| astatham-gatk | SNP | ti | map_l150_m2_e0 | * | 91.3750 | 84.3165 | 99.7232 | 79.9461 | 17295 | 3217 | 17291 | 48 | 27 | 56.2500 | |