PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
43401-43450 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | INDEL | I6_15 | map_l100_m0_e0 | homalt | 90.9091 | 83.3333 | 100.0000 | 89.0110 | 10 | 2 | 10 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | map_l125_m0_e0 | * | 76.9231 | 66.6667 | 90.9091 | 95.0000 | 10 | 5 | 10 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | SNP | * | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 62.9630 | 10 | 0 | 10 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 62.9630 | 10 | 0 | 10 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 71.4286 | 58.8235 | 90.9091 | 97.4654 | 10 | 7 | 10 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | tv | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 56.5217 | 10 | 0 | 10 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 90.9091 | 83.3333 | 100.0000 | 40.0000 | 10 | 2 | 12 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 95.2381 | 90.9091 | 100.0000 | 99.2679 | 10 | 1 | 10 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | func_cds | homalt | 90.9091 | 83.3333 | 100.0000 | 60.0000 | 10 | 2 | 10 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | tech_badpromoters | het | 95.2381 | 100.0000 | 90.9091 | 47.6190 | 10 | 0 | 10 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | func_cds | * | 90.9091 | 83.3333 | 100.0000 | 61.5385 | 10 | 2 | 10 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | map_l100_m0_e0 | * | 90.9091 | 90.9091 | 90.9091 | 75.0000 | 10 | 1 | 10 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 90.9091 | 100.0000 | 83.3333 | 96.4392 | 10 | 0 | 10 | 2 | 0 | 0.0000 | |
| rpoplin-dv42 | SNP | * | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 60.0000 | 10 | 0 | 10 | 0 | 0 | ||
| rpoplin-dv42 | SNP | tv | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 60.0000 | 10 | 0 | 10 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 95.2381 | 90.9091 | 100.0000 | 83.5443 | 10 | 1 | 13 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 95.2381 | 90.9091 | 100.0000 | 98.7406 | 10 | 1 | 10 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 98.6755 | 10 | 0 | 10 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | func_cds | * | 90.9091 | 83.3333 | 100.0000 | 72.2222 | 10 | 2 | 10 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | map_l100_m0_e0 | * | 95.2381 | 90.9091 | 100.0000 | 94.1860 | 10 | 1 | 10 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | map_l150_m1_e0 | * | 95.2381 | 90.9091 | 100.0000 | 94.3182 | 10 | 1 | 10 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | map_l150_m2_e0 | * | 95.2381 | 90.9091 | 100.0000 | 95.0980 | 10 | 1 | 10 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | map_l150_m2_e1 | * | 95.2381 | 90.9091 | 100.0000 | 95.1220 | 10 | 1 | 10 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 90.9091 | 83.3333 | 100.0000 | 38.8889 | 10 | 2 | 11 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 56.5217 | 10 | 0 | 10 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 0.0000 | 66.6667 | 0.0000 | 0.0000 | 10 | 5 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 0.0000 | 66.6667 | 0.0000 | 0.0000 | 10 | 5 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 48.0929 | 41.6667 | 56.8627 | 26.6187 | 10 | 14 | 58 | 44 | 40 | 90.9091 | |
| gduggal-snapvard | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 0.0000 | 52.6316 | 0.0000 | 0.0000 | 10 | 9 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | map_l250_m1_e0 | * | 56.9106 | 55.5556 | 58.3333 | 95.4631 | 10 | 8 | 14 | 10 | 5 | 50.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l250_m2_e0 | het | 60.0858 | 71.4286 | 51.8519 | 94.9343 | 10 | 4 | 14 | 13 | 7 | 53.8462 | |
| gduggal-snapvard | INDEL | D6_15 | map_l250_m2_e1 | het | 61.2245 | 71.4286 | 53.5714 | 94.9183 | 10 | 4 | 15 | 13 | 7 | 53.8462 | |
| ghariani-varprowl | INDEL | I16_PLUS | * | hetalt | 0.0000 | 0.4766 | 0.0000 | 0.0000 | 10 | 2088 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I16_PLUS | HG002compoundhet | hetalt | 0.0000 | 0.4778 | 0.0000 | 0.0000 | 10 | 2083 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I1_5 | tech_badpromoters | homalt | 86.9565 | 76.9231 | 100.0000 | 62.9630 | 10 | 3 | 10 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 0.3782 | 0.0000 | 0.0000 | 10 | 2634 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.5647 | 0.0000 | 0.0000 | 10 | 1761 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 1.5601 | 0.0000 | 0.0000 | 10 | 631 | 0 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9270 | 10 | 0 | 10 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 95.2381 | 100.0000 | 90.9091 | 99.3176 | 10 | 0 | 10 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 38.4615 | 28.5714 | 58.8235 | 98.1006 | 10 | 25 | 10 | 7 | 4 | 57.1429 | |
| gduggal-snapplat | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 80.0000 | 76.9231 | 83.3333 | 86.3636 | 10 | 3 | 10 | 2 | 1 | 50.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 1.0256 | 0.0000 | 0.0000 | 10 | 965 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 4.9557 | 2.7624 | 24.0506 | 74.0984 | 10 | 352 | 19 | 60 | 43 | 71.6667 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 95.2381 | 90.9091 | 100.0000 | 99.4366 | 10 | 1 | 10 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 99.4104 | 10 | 0 | 10 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 96.6102 | 10 | 5 | 8 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 96.6667 | 10 | 5 | 8 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l125_m0_e0 | * | 71.4286 | 66.6667 | 76.9231 | 86.8687 | 10 | 5 | 10 | 3 | 2 | 66.6667 | |
| gduggal-snapfb | SNP | * | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 56.5217 | 10 | 0 | 10 | 0 | 0 | ||