PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
43301-43350 / 86044 show all | |||||||||||||||
| ckim-isaac | INDEL | * | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9321 | 10 | 0 | 10 | 0 | 0 | ||
| ckim-isaac | INDEL | * | map_l250_m0_e0 | homalt | 57.1429 | 40.0000 | 100.0000 | 96.3235 | 10 | 15 | 10 | 0 | 0 | ||
| ckim-dragen | SNP | tv | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 64.2857 | 10 | 0 | 10 | 0 | 0 | ||
| ckim-gatk | INDEL | * | decoy | * | 95.2381 | 100.0000 | 90.9091 | 99.9688 | 10 | 0 | 10 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.5157 | 10 | 0 | 10 | 0 | 0 | ||
| ckim-gatk | INDEL | * | map_l125_m0_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 95.5556 | 10 | 1 | 10 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 95.2381 | 90.9091 | 100.0000 | 83.1169 | 10 | 1 | 13 | 0 | 0 | ||
| ckim-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 98.9648 | 10 | 0 | 10 | 0 | 0 | ||
| ciseli-custom | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 55.5556 | 76.9231 | 43.4783 | 70.8861 | 10 | 3 | 10 | 13 | 3 | 23.0769 | |
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 71.4286 | 83.3333 | 62.5000 | 85.1852 | 10 | 2 | 10 | 6 | 0 | 0.0000 | |
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 71.4286 | 83.3333 | 62.5000 | 85.1852 | 10 | 2 | 10 | 6 | 0 | 0.0000 | |
| ciseli-custom | SNP | ti | map_l150_m1_e0 | hetalt | 74.0741 | 66.6667 | 83.3333 | 73.3333 | 10 | 5 | 10 | 2 | 2 | 100.0000 | |
| ciseli-custom | SNP | ti | map_l150_m2_e0 | hetalt | 74.0741 | 66.6667 | 83.3333 | 76.9231 | 10 | 5 | 10 | 2 | 2 | 100.0000 | |
| ciseli-custom | SNP | ti | map_l150_m2_e1 | hetalt | 74.0741 | 66.6667 | 83.3333 | 77.3585 | 10 | 5 | 10 | 2 | 2 | 100.0000 | |
| ciseli-custom | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 55.5556 | 76.9231 | 43.4783 | 70.8861 | 10 | 3 | 10 | 13 | 3 | 23.0769 | |
| ckim-dragen | INDEL | * | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9687 | 10 | 0 | 10 | 0 | 0 | ||
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.5206 | 10 | 0 | 10 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 95.2381 | 90.9091 | 100.0000 | 84.1463 | 10 | 1 | 13 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 36.4238 | 22.7273 | 91.6667 | 97.8799 | 10 | 34 | 11 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l100_m0_e0 | * | 48.0349 | 35.7143 | 73.3333 | 93.9271 | 10 | 18 | 11 | 4 | 1 | 25.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 51.2821 | 66.6667 | 41.6667 | 90.1639 | 10 | 5 | 10 | 14 | 11 | 78.5714 | |
| ciseli-custom | INDEL | D16_PLUS | map_l125_m1_e0 | het | 66.6667 | 50.0000 | 100.0000 | 92.8571 | 10 | 10 | 10 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | map_l125_m2_e0 | het | 66.6667 | 50.0000 | 100.0000 | 93.4211 | 10 | 10 | 10 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | map_l125_m2_e1 | het | 66.6667 | 50.0000 | 100.0000 | 93.5065 | 10 | 10 | 10 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | map_l250_m0_e0 | homalt | 76.9231 | 76.9231 | 76.9231 | 97.6234 | 10 | 3 | 10 | 3 | 2 | 66.6667 | |
| ciseli-custom | INDEL | D6_15 | map_l150_m0_e0 | het | 55.5556 | 50.0000 | 62.5000 | 96.8317 | 10 | 10 | 10 | 6 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D6_15 | map_l250_m1_e0 | * | 60.6061 | 55.5556 | 66.6667 | 97.9812 | 10 | 8 | 10 | 5 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D6_15 | map_l250_m2_e0 | * | 51.2821 | 45.4545 | 58.8235 | 97.9858 | 10 | 12 | 10 | 7 | 2 | 28.5714 | |
| ciseli-custom | INDEL | D6_15 | map_l250_m2_e1 | * | 50.0000 | 45.4545 | 55.5556 | 97.9167 | 10 | 12 | 10 | 8 | 2 | 25.0000 | |
| ciseli-custom | INDEL | I6_15 | HG002compoundhet | homalt | 0.8094 | 32.2581 | 0.4098 | 28.2142 | 10 | 21 | 10 | 2430 | 2370 | 97.5309 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 22.4719 | 41.6667 | 15.3846 | 67.8218 | 10 | 14 | 10 | 55 | 52 | 94.5455 | |
| cchapple-custom | INDEL | * | map_l125_m0_e0 | hetalt | 0.0000 | 90.9091 | 0.0000 | 0.0000 | 10 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | func_cds | * | 86.9565 | 83.3333 | 90.9091 | 75.5556 | 10 | 2 | 10 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 0.0000 | 83.3333 | 0.0000 | 0.0000 | 10 | 2 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 99.0319 | 10 | 0 | 10 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 54.1667 | 10 | 0 | 11 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | map_l125_m0_e0 | * | 76.9231 | 83.3333 | 71.4286 | 97.7671 | 10 | 2 | 10 | 4 | 1 | 25.0000 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 98.8610 | 10 | 0 | 10 | 0 | 0 | ||
| ckim-dragen | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 86.9565 | 76.9231 | 100.0000 | 95.9350 | 10 | 3 | 10 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 47.3684 | 10 | 0 | 10 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | map_l150_m1_e0 | * | 90.9091 | 90.9091 | 90.9091 | 94.9074 | 10 | 1 | 10 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | map_l150_m2_e0 | * | 90.9091 | 90.9091 | 90.9091 | 95.7198 | 10 | 1 | 10 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | map_l150_m2_e1 | * | 86.9565 | 90.9091 | 83.3333 | 95.3668 | 10 | 1 | 10 | 2 | 0 | 0.0000 | |
| ckim-dragen | SNP | * | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 64.2857 | 10 | 0 | 10 | 0 | 0 | ||
| cchapple-custom | SNP | * | func_cds | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 10 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | tv | func_cds | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 10 | 0 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 52.6316 | 50.0000 | 55.5556 | 99.5007 | 10 | 10 | 10 | 8 | 4 | 50.0000 | |
| ciseli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 60.6061 | 58.8235 | 62.5000 | 99.5311 | 10 | 7 | 10 | 6 | 3 | 50.0000 | |
| jlack-gatk | INDEL | * | decoy | * | 86.9565 | 100.0000 | 76.9231 | 99.9640 | 10 | 0 | 10 | 3 | 0 | 0.0000 | |
| jlack-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.4837 | 10 | 0 | 10 | 0 | 0 | ||