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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
4251-4300 / 86044 show all
hfeng-pmm1SNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.1217
98.3082
99.9487
53.8083
175493021754890
0.0000
jmaeng-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
98.0265
98.4792
97.5780
71.1859
1754827117163426391
91.7840
mlin-fermikitINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
92.5136
96.5980
88.7606
66.4930
175486181752422192149
96.8454
mlin-fermikitINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
92.5136
96.5980
88.7606
66.4930
175486181752422192149
96.8454
dgrover-gatkSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.3936
99.8748
98.9170
66.2587
17546221753619215
7.8125
ltrigg-rtg1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
97.8994
96.0896
99.7786
37.7218
17545714175773937
94.8718
bgallagher-sentieonSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.2725
99.8634
98.6886
65.8031
17544241753423315
6.4378
ckim-dragenSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.7926
99.8634
99.7220
66.5121
1754424175764913
26.5306
rpoplin-dv42SNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.8491
99.8406
99.8576
65.2848
1754028175272517
68.0000
hfeng-pmm2SNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.0510
98.2298
99.8861
53.8211
1753531617534201
5.0000
jlack-gatkSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
98.4079
99.8008
97.0534
66.9969
17533351752353219
3.5714
ckim-gatkSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.3819
99.8008
98.9665
67.1777
17533351752318315
8.1967
jpowers-varprowlSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
97.8917
98.2074
97.5780
64.8285
175313201760643724
5.4920
gduggal-snapvardINDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
70.9708
71.4018
70.5450
38.3153
1752270182227693018410
90.4204
jli-customSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.2041
99.7097
98.7036
65.3598
17517511751223014
6.0870
jmaeng-gatkSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.4801
99.6983
99.2628
67.4240
17515531750513011
8.4615
cchapple-customSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.0130
99.6869
98.3480
64.2091
17513551762229623
7.7703
eyeh-varpipeSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
97.3719
99.6869
95.1620
62.9872
17513551638583363
7.5630
gduggal-bwafbINDELI1_5HG002complexvarhet
97.6126
96.2835
98.9789
54.8150
1751367618224188155
82.4468
eyeh-varpipeSNP*map_l125_m2_e1homalt
99.8554
99.8175
99.8934
71.0933
1750032168711810
55.5556
hfeng-pmm2SNP*map_l125_m2_e1homalt
99.8146
99.8175
99.8118
69.0869
1750032175003314
42.4242
cchapple-customSNPtimap_l100_m1_e0homalt
98.6915
97.4276
99.9886
54.9898
174984621749322
100.0000
hfeng-pmm1SNP*map_l125_m2_e1homalt
99.8117
99.7947
99.8288
69.0610
1749636174963012
40.0000
hfeng-pmm3SNP*map_l125_m2_e1homalt
99.8003
99.7775
99.8231
68.9786
1749339174933113
41.9355
ltrigg-rtg2SNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.3248
99.5674
99.0833
60.5130
17492761751016212
7.4074
ckim-vqsrSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.2929
99.5560
99.0312
67.2462
17490781748017115
8.7719
ltrigg-rtg1SNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.4459
99.5389
99.3531
60.6036
1748781175081149
7.8947
gduggal-bwafbSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
98.4793
99.5219
97.4583
69.5878
17484841752345779
17.2867
egarrison-hhgaSNP*map_l125_m2_e1homalt
99.8144
99.7034
99.9257
69.0000
1748052174801313
100.0000
ltrigg-rtg1SNP*map_l125_m2_e1homalt
99.7859
99.6635
99.9086
68.1960
1747359174801616
100.0000
mlin-fermikitSNPtimap_l100_m2_e0het
72.2999
57.0570
98.6561
56.4180
1747213150174722389
3.7815
astatham-gatkSNPtimap_l150_m2_e1*
91.3679
84.3025
99.7259
80.0126
174703253174664827
56.2500
jli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
98.3108
98.0414
98.5817
67.0115
1747034917099246203
82.5203
raldana-dualsentieonSNP*map_l125_m2_e1homalt
99.7744
99.6350
99.9142
65.3032
1746864174681511
73.3333
jlack-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
96.7207
98.0134
95.4617
70.0763
1746535417080812691
85.0985
ltrigg-rtg2SNP*map_l125_m2_e1homalt
99.7600
99.5779
99.9428
65.9933
174587417465109
90.0000
bgallagher-sentieonSNP*map_l125_m2_e1homalt
99.7315
99.5779
99.8856
66.0476
1745874174582015
75.0000
jli-customSNP*map_l125_m2_e1homalt
99.7486
99.5779
99.9199
65.4177
1745874174581413
92.8571
ndellapenna-hhgaSNP*map_l125_m2_e1homalt
99.7429
99.5665
99.9199
68.0072
1745676174561413
92.8571
gduggal-bwavardSNPtimap_l100_m1_e0homalt
98.5262
97.1882
99.9016
59.9578
17455505172561713
76.4706
qzeng-customSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
98.5348
99.3169
97.7649
70.3556
174481201749640017
4.2500
dgrover-gatkSNPtiHG002compoundhet*
99.8369
99.8284
99.8455
35.6925
1744830174462721
77.7778
bgallagher-sentieonSNPtiHG002compoundhet*
99.8512
99.8226
99.8798
35.5355
1744731174452114
66.6667
jli-customSNPtiHG002compoundhet*
99.7826
99.8112
99.7541
35.5495
1744533174454322
51.1628
ckim-dragenSNPtiHG002compoundhet*
99.7941
99.8055
99.7828
35.8899
1744434174573818
47.3684
gduggal-snapfbSNPtimap_l100_m1_e0homalt
98.4338
97.1102
99.7940
67.2966
17441519174423620
55.5556
jlack-gatkSNPtiHG002compoundhet*
99.6570
99.7425
99.5716
36.7466
1743345174317522
29.3333
gduggal-bwavardSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
96.8048
97.6528
95.9714
65.8504
1743241917319727195
26.8226
qzeng-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
94.6261
95.9485
93.3397
58.3275
174307362067114751218
82.5763
qzeng-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
94.6261
95.9485
93.3397
58.3275
174307362067114751218
82.5763