PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
42801-42850 / 86044 show all | |||||||||||||||
| jlack-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 78.5714 | 64.7059 | 100.0000 | 98.1293 | 11 | 6 | 11 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 95.6522 | 91.6667 | 100.0000 | 99.3844 | 11 | 1 | 11 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.0893 | 11 | 0 | 11 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D16_PLUS | func_cds | * | 91.6667 | 91.6667 | 91.6667 | 71.4286 | 11 | 1 | 11 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | map_l250_m1_e0 | het | 100.0000 | 100.0000 | 100.0000 | 95.0673 | 11 | 0 | 11 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I16_PLUS | func_cds | * | 95.6522 | 91.6667 | 100.0000 | 73.8095 | 11 | 1 | 11 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I16_PLUS | map_l100_m0_e0 | * | 91.6667 | 100.0000 | 84.6154 | 95.6522 | 11 | 0 | 11 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 91.6667 | 84.6154 | 100.0000 | 68.5714 | 11 | 2 | 11 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_l100_m0_e0 | homalt | 95.6522 | 91.6667 | 100.0000 | 87.9121 | 11 | 1 | 11 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 91.6667 | 91.6667 | 91.6667 | 99.3247 | 11 | 1 | 11 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | * | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.4545 | 11 | 0 | 11 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | map_l250_m1_e0 | het | 100.0000 | 100.0000 | 100.0000 | 96.2199 | 11 | 0 | 11 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I16_PLUS | func_cds | * | 95.6522 | 91.6667 | 100.0000 | 73.1707 | 11 | 1 | 11 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I16_PLUS | map_l100_m0_e0 | * | 91.6667 | 100.0000 | 84.6154 | 95.1852 | 11 | 0 | 11 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 91.6667 | 84.6154 | 100.0000 | 68.5714 | 11 | 2 | 11 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D16_PLUS | func_cds | * | 91.6667 | 91.6667 | 91.6667 | 76.4706 | 11 | 1 | 11 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | map_l250_m1_e0 | het | 100.0000 | 100.0000 | 100.0000 | 96.9444 | 11 | 0 | 11 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I16_PLUS | func_cds | * | 95.6522 | 91.6667 | 100.0000 | 74.4186 | 11 | 1 | 11 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I16_PLUS | map_l100_m0_e0 | * | 95.6522 | 100.0000 | 91.6667 | 96.1290 | 11 | 0 | 11 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 95.6522 | 91.6667 | 100.0000 | 33.3333 | 11 | 1 | 12 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | map_l100_m0_e0 | homalt | 95.6522 | 91.6667 | 100.0000 | 88.7755 | 11 | 1 | 11 | 0 | 0 | ||
| jlack-gatk | INDEL | D16_PLUS | map_l125_m0_e0 | * | 81.4815 | 91.6667 | 73.3333 | 97.2727 | 11 | 1 | 11 | 4 | 1 | 25.0000 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 98.8589 | 11 | 0 | 11 | 0 | 0 | ||
| jlack-gatk | INDEL | D6_15 | map_l250_m1_e0 | het | 88.0000 | 100.0000 | 78.5714 | 97.5395 | 11 | 0 | 11 | 3 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | func_cds | * | 95.6522 | 91.6667 | 100.0000 | 78.8462 | 11 | 1 | 11 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | tech_badpromoters | * | 91.6667 | 84.6154 | 100.0000 | 47.8261 | 11 | 2 | 12 | 0 | 0 | ||
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 57.5581 | 73.3333 | 47.3684 | 85.4962 | 11 | 4 | 9 | 10 | 1 | 10.0000 | |
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 54.7264 | 68.7500 | 45.4545 | 94.3445 | 11 | 5 | 10 | 12 | 1 | 8.3333 | |
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 45.4277 | 64.7059 | 35.0000 | 94.0828 | 11 | 6 | 7 | 13 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 95.6522 | 91.6667 | 100.0000 | 80.0000 | 11 | 1 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 2.0561 | 0.0000 | 0.0000 | 11 | 524 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | func_cds | * | 78.5714 | 91.6667 | 68.7500 | 74.1935 | 11 | 1 | 11 | 5 | 1 | 20.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | segdup | homalt | 95.6522 | 91.6667 | 100.0000 | 92.5170 | 11 | 1 | 11 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 16.6415 | 14.6667 | 19.2308 | 69.7674 | 11 | 64 | 10 | 42 | 38 | 90.4762 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 31.3390 | 84.6154 | 19.2308 | 69.2308 | 11 | 2 | 10 | 42 | 38 | 90.4762 | |
| gduggal-bwavard | INDEL | D1_5 | map_l250_m0_e0 | homalt | 91.6667 | 84.6154 | 100.0000 | 96.9188 | 11 | 2 | 11 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D6_15 | map_l250_m1_e0 | het | 91.6667 | 100.0000 | 84.6154 | 97.7391 | 11 | 0 | 11 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 73.3333 | 57.8947 | 100.0000 | 93.6047 | 11 | 8 | 11 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 73.3333 | 57.8947 | 100.0000 | 94.3299 | 11 | 8 | 11 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 70.9677 | 55.0000 | 100.0000 | 94.5000 | 11 | 9 | 11 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l250_m1_e0 | homalt | 40.0000 | 25.0000 | 100.0000 | 98.6453 | 11 | 33 | 11 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 47.8261 | 31.4286 | 100.0000 | 96.1938 | 11 | 24 | 11 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 81.4815 | 73.3333 | 91.6667 | 96.9773 | 11 | 4 | 11 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 95.6522 | 91.6667 | 100.0000 | 95.9854 | 11 | 1 | 11 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 95.6522 | 91.6667 | 100.0000 | 95.9854 | 11 | 1 | 11 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 64.7059 | 64.7059 | 64.7059 | 99.6822 | 11 | 6 | 11 | 6 | 4 | 66.6667 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 59.4595 | 45.8333 | 84.6154 | 35.0000 | 11 | 13 | 11 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l250_m1_e0 | het | 100.0000 | 100.0000 | 100.0000 | 95.2000 | 11 | 0 | 12 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 40.0000 | 25.0000 | 100.0000 | 79.5455 | 11 | 33 | 36 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | map_l125_m0_e0 | * | 80.7128 | 73.3333 | 89.7436 | 84.6457 | 11 | 4 | 35 | 4 | 3 | 75.0000 | |