PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
42751-42800 / 86044 show all | |||||||||||||||
| ciseli-custom | SNP | tv | map_l150_m2_e0 | hetalt | 68.5714 | 60.0000 | 80.0000 | 82.5581 | 12 | 8 | 12 | 3 | 2 | 66.6667 | |
| ciseli-custom | SNP | tv | map_l150_m2_e1 | hetalt | 68.5714 | 60.0000 | 80.0000 | 82.9545 | 12 | 8 | 12 | 3 | 2 | 66.6667 | |
| ckim-dragen | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.4513 | 12 | 0 | 12 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | func_cds | * | 100.0000 | 100.0000 | 100.0000 | 83.3333 | 12 | 0 | 12 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 41.6667 | 12 | 0 | 14 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 53.6585 | 68.7500 | 44.0000 | 90.2724 | 11 | 5 | 11 | 14 | 11 | 78.5714 | |
| ciseli-custom | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 52.3810 | 68.7500 | 42.3077 | 90.1515 | 11 | 5 | 11 | 15 | 12 | 80.0000 | |
| ciseli-custom | INDEL | D16_PLUS | segdup | homalt | 69.1824 | 91.6667 | 55.5556 | 94.1935 | 11 | 1 | 10 | 8 | 7 | 87.5000 | |
| ciseli-custom | INDEL | D6_15 | func_cds | homalt | 91.6667 | 91.6667 | 91.6667 | 58.6207 | 11 | 1 | 11 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D6_15 | tech_badpromoters | * | 68.7500 | 64.7059 | 73.3333 | 53.1250 | 11 | 6 | 11 | 4 | 3 | 75.0000 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 35.4839 | 31.4286 | 40.7407 | 83.1250 | 11 | 24 | 11 | 16 | 15 | 93.7500 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 3.5144 | 0.0000 | 0.0000 | 11 | 302 | 0 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 95.6522 | 91.6667 | 100.0000 | 48.0000 | 11 | 1 | 13 | 0 | 0 | ||
| ckim-gatk | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 98.9141 | 11 | 0 | 11 | 0 | 0 | ||
| ckim-gatk | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 84.6154 | 73.3333 | 100.0000 | 96.8023 | 11 | 4 | 11 | 0 | 0 | ||
| ckim-gatk | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 84.6154 | 73.3333 | 100.0000 | 96.8750 | 11 | 4 | 11 | 0 | 0 | ||
| ckim-dragen | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 98.8197 | 11 | 0 | 11 | 0 | 0 | ||
| ckim-dragen | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 88.0000 | 78.5714 | 100.0000 | 93.5294 | 11 | 3 | 11 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | map_l125_m0_e0 | homalt | 95.6522 | 91.6667 | 100.0000 | 94.7115 | 11 | 1 | 11 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | map_l250_m1_e0 | het | 95.6522 | 100.0000 | 91.6667 | 96.8085 | 11 | 0 | 11 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | func_cds | * | 95.6522 | 91.6667 | 100.0000 | 80.0000 | 11 | 1 | 11 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | map_l100_m0_e0 | * | 91.6667 | 100.0000 | 84.6154 | 93.0108 | 11 | 0 | 11 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 95.6522 | 91.6667 | 100.0000 | 33.3333 | 11 | 1 | 12 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 91.6667 | 0.0000 | 0.0000 | 11 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | map_l100_m0_e0 | homalt | 95.6522 | 91.6667 | 100.0000 | 88.0435 | 11 | 1 | 11 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | map_l125_m0_e0 | * | 81.4815 | 73.3333 | 91.6667 | 95.4887 | 11 | 4 | 11 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l150_m1_e0 | het | 82.1333 | 73.3333 | 93.3333 | 95.3416 | 11 | 4 | 14 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l150_m2_e0 | het | 82.1333 | 73.3333 | 93.3333 | 95.9350 | 11 | 4 | 14 | 1 | 0 | 0.0000 | |
| cchapple-custom | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 72.4706 | 64.7059 | 82.3529 | 96.0465 | 11 | 6 | 14 | 3 | 0 | 0.0000 | |
| ciseli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 6.5868 | 0.0000 | 0.0000 | 11 | 156 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 91.6667 | 0.0000 | 0.0000 | 11 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 98.9729 | 11 | 0 | 11 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 90.9225 | 84.6154 | 98.2456 | 43.0000 | 11 | 2 | 56 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D6_15 | map_l250_m1_e0 | het | 93.3333 | 100.0000 | 87.5000 | 95.7560 | 11 | 0 | 14 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I16_PLUS | func_cds | * | 95.6522 | 91.6667 | 100.0000 | 75.5556 | 11 | 1 | 11 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | map_l100_m0_e0 | * | 96.0000 | 100.0000 | 92.3077 | 95.6954 | 11 | 0 | 12 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I16_PLUS | map_l150_m1_e0 | * | 96.0000 | 100.0000 | 92.3077 | 96.0486 | 11 | 0 | 12 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I16_PLUS | map_l150_m2_e0 | * | 96.0000 | 100.0000 | 92.3077 | 96.4481 | 11 | 0 | 12 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I16_PLUS | map_l150_m2_e1 | * | 96.0000 | 100.0000 | 92.3077 | 96.4865 | 11 | 0 | 12 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D6_15 | map_l250_m1_e0 | het | 95.6522 | 100.0000 | 91.6667 | 97.9346 | 11 | 0 | 11 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | func_cds | * | 95.6522 | 91.6667 | 100.0000 | 77.5510 | 11 | 1 | 11 | 0 | 0 | ||
| ckim-gatk | INDEL | I16_PLUS | map_l100_m0_e0 | * | 95.6522 | 100.0000 | 91.6667 | 97.0732 | 11 | 0 | 11 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I6_15 | map_l100_m0_e0 | homalt | 95.6522 | 91.6667 | 100.0000 | 91.2000 | 11 | 1 | 11 | 0 | 0 | ||
| ckim-gatk | SNP | * | map_l150_m1_e0 | hetalt | 70.9677 | 55.0000 | 100.0000 | 93.8202 | 11 | 9 | 11 | 0 | 0 | ||
| ckim-gatk | SNP | * | map_l150_m2_e0 | hetalt | 70.9677 | 55.0000 | 100.0000 | 94.8357 | 11 | 9 | 11 | 0 | 0 | ||
| ckim-gatk | SNP | * | map_l150_m2_e1 | hetalt | 70.9677 | 55.0000 | 100.0000 | 94.8357 | 11 | 9 | 11 | 0 | 0 | ||
| ckim-gatk | SNP | tv | map_l150_m1_e0 | hetalt | 70.9677 | 55.0000 | 100.0000 | 93.8202 | 11 | 9 | 11 | 0 | 0 | ||
| ckim-gatk | SNP | tv | map_l150_m2_e0 | hetalt | 70.9677 | 55.0000 | 100.0000 | 94.8357 | 11 | 9 | 11 | 0 | 0 | ||
| ckim-gatk | SNP | tv | map_l150_m2_e1 | hetalt | 70.9677 | 55.0000 | 100.0000 | 94.8357 | 11 | 9 | 11 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 91.6667 | 84.6154 | 100.0000 | 70.2703 | 11 | 2 | 11 | 0 | 0 | ||