PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
42451-42500 / 86044 show all | |||||||||||||||
| bgallagher-sentieon | INDEL | D16_PLUS | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 96.6759 | 12 | 0 | 12 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 88.8889 | 85.7143 | 92.3077 | 92.6554 | 12 | 2 | 12 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 96.0000 | 92.3077 | 100.0000 | 95.2569 | 12 | 1 | 12 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 61.2903 | 12 | 0 | 12 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 48.1481 | 12 | 0 | 14 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 56.7568 | 12 | 0 | 16 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D16_PLUS | map_l125_m0_e0 | * | 92.3077 | 100.0000 | 85.7143 | 95.3177 | 12 | 0 | 12 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 95.3668 | 12 | 0 | 12 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 92.3077 | 92.3077 | 92.3077 | 85.3933 | 12 | 1 | 12 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 94.0887 | 12 | 2 | 12 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 96.0000 | 92.3077 | 100.0000 | 95.8042 | 12 | 1 | 12 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 55.5556 | 12 | 0 | 12 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 91.0448 | 12 | 0 | 12 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_l100_m0_e0 | het | 80.0000 | 70.5882 | 92.3077 | 92.6554 | 12 | 5 | 12 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 92.3077 | 92.3077 | 92.3077 | 83.7500 | 12 | 1 | 12 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.3567 | 12 | 0 | 12 | 0 | 0 | ||
| hfeng-pmm1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.3567 | 12 | 0 | 12 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 92.3077 | 92.3077 | 92.3077 | 83.7500 | 12 | 1 | 12 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.2581 | 12 | 0 | 12 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.2581 | 12 | 0 | 12 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.0000 | 92.3077 | 100.0000 | 85.3659 | 12 | 1 | 12 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | func_cds | * | 100.0000 | 100.0000 | 100.0000 | 73.3333 | 12 | 0 | 12 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 48.1481 | 12 | 0 | 14 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 56.7568 | 12 | 0 | 16 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l125_m0_e0 | * | 92.3077 | 100.0000 | 85.7143 | 95.6113 | 12 | 0 | 12 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 95.7895 | 12 | 0 | 12 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 48.1481 | 12 | 0 | 14 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 55.8824 | 12 | 0 | 15 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D16_PLUS | map_l125_m0_e0 | * | 92.3077 | 100.0000 | 85.7143 | 96.3351 | 12 | 0 | 12 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 96.0000 | 12 | 0 | 12 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 92.3077 | 92.3077 | 92.3077 | 85.7143 | 12 | 1 | 12 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 94.1176 | 12 | 2 | 12 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 96.0000 | 92.3077 | 100.0000 | 95.9044 | 12 | 1 | 12 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 60.0000 | 12 | 0 | 12 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 91.7241 | 12 | 0 | 12 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 96.0000 | 92.3077 | 100.0000 | 66.6667 | 12 | 1 | 12 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | map_l150_m1_e0 | het | 85.7143 | 80.0000 | 92.3077 | 94.9416 | 12 | 3 | 12 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | map_l150_m2_e0 | het | 85.7143 | 80.0000 | 92.3077 | 95.4064 | 12 | 3 | 12 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | map_l150_m2_e1 | het | 82.7586 | 75.0000 | 92.3077 | 95.5172 | 12 | 4 | 12 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.0000 | 92.3077 | 100.0000 | 85.3659 | 12 | 1 | 12 | 0 | 0 | ||
| jlack-gatk | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.4097 | 12 | 0 | 12 | 0 | 0 | ||
| jlack-gatk | INDEL | D16_PLUS | func_cds | * | 96.0000 | 100.0000 | 92.3077 | 81.9444 | 12 | 0 | 12 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 54.2857 | 12 | 0 | 16 | 0 | 0 | ||
| jlack-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 88.8889 | 80.0000 | 100.0000 | 97.3333 | 12 | 3 | 12 | 0 | 0 | ||
| jlack-gatk | INDEL | D16_PLUS | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 96.3746 | 12 | 0 | 12 | 0 | 0 | ||
| jlack-gatk | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 93.7500 | 12 | 2 | 12 | 0 | 0 | ||
| jlack-gatk | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 96.0000 | 92.3077 | 100.0000 | 95.9044 | 12 | 1 | 12 | 0 | 0 | ||
| jlack-gatk | INDEL | D6_15 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 58.6207 | 12 | 0 | 12 | 0 | 0 | ||
| jlack-gatk | INDEL | D6_15 | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 91.7241 | 12 | 0 | 12 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 92.3077 | 92.3077 | 92.3077 | 85.3933 | 12 | 1 | 12 | 1 | 0 | 0.0000 | |