PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
42151-42200 / 86044 show all | |||||||||||||||
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 65.0000 | 86.6667 | 52.0000 | 85.0299 | 13 | 2 | 13 | 12 | 1 | 8.3333 | |
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 65.0000 | 86.6667 | 52.0000 | 85.0299 | 13 | 2 | 13 | 12 | 1 | 8.3333 | |
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 31.9534 | 86.6667 | 19.5876 | 89.3054 | 13 | 2 | 19 | 78 | 3 | 3.8462 | |
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 18.7350 | 81.2500 | 10.5882 | 85.7263 | 13 | 3 | 18 | 152 | 2 | 1.3158 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 65.0000 | 86.6667 | 52.0000 | 85.0299 | 13 | 2 | 13 | 12 | 1 | 8.3333 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 65.0000 | 86.6667 | 52.0000 | 85.0299 | 13 | 2 | 13 | 12 | 1 | 8.3333 | |
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 11.7249 | 76.4706 | 6.3492 | 79.5676 | 13 | 4 | 12 | 177 | 2 | 1.1299 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 65.8537 | 13 | 0 | 14 | 0 | 0 | ||
| ckim-gatk | INDEL | I1_5 | map_l250_m0_e0 | het | 81.2500 | 86.6667 | 76.4706 | 98.9875 | 13 | 2 | 13 | 4 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 58.0645 | 13 | 0 | 13 | 0 | 0 | ||
| ckim-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 100.0000 | 100.0000 | 100.0000 | 67.5000 | 13 | 0 | 13 | 0 | 0 | ||
| ckim-gatk | INDEL | I6_15 | map_l125_m0_e0 | * | 86.6667 | 86.6667 | 86.6667 | 96.0212 | 13 | 2 | 13 | 2 | 1 | 50.0000 | |
| ckim-gatk | INDEL | I6_15 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 56.6667 | 13 | 0 | 13 | 0 | 0 | ||
| ckim-isaac | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 86.6667 | 76.4706 | 100.0000 | 99.4338 | 13 | 4 | 13 | 0 | 0 | ||
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 70.2703 | 61.9048 | 81.2500 | 99.9411 | 13 | 8 | 13 | 3 | 1 | 33.3333 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 96.2963 | 100.0000 | 92.8571 | 50.0000 | 13 | 0 | 13 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 96.2963 | 100.0000 | 92.8571 | 87.5000 | 13 | 0 | 13 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 96.2963 | 100.0000 | 92.8571 | 60.0000 | 13 | 0 | 13 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | D1_5 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.5000 | 13 | 0 | 13 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | ti | map_l150_m1_e0 | hetalt | 92.8571 | 86.6667 | 100.0000 | 61.7647 | 13 | 2 | 13 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | ti | map_l150_m2_e0 | hetalt | 92.8571 | 86.6667 | 100.0000 | 69.0476 | 13 | 2 | 13 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | ti | map_l150_m2_e1 | hetalt | 92.8571 | 86.6667 | 100.0000 | 69.0476 | 13 | 2 | 13 | 0 | 0 | ||
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 68.4211 | 86.6667 | 56.5217 | 98.1437 | 13 | 2 | 13 | 10 | 10 | 100.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 92.8571 | 100.0000 | 86.6667 | 62.5000 | 13 | 0 | 13 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l150_m2_e0 | * | 60.4651 | 76.4706 | 50.0000 | 94.0774 | 13 | 4 | 13 | 13 | 2 | 15.3846 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l150_m2_e1 | * | 59.0909 | 72.2222 | 50.0000 | 94.2094 | 13 | 5 | 13 | 13 | 2 | 15.3846 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 56.5217 | 100.0000 | 39.3939 | 54.1667 | 13 | 0 | 13 | 20 | 19 | 95.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l150_m1_e0 | het | 92.8571 | 92.8571 | 92.8571 | 87.0370 | 13 | 1 | 13 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 81.9277 | 13 | 0 | 15 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 38.0952 | 13 | 0 | 13 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | map_l250_m0_e0 | het | 89.6552 | 86.6667 | 92.8571 | 94.4444 | 13 | 2 | 13 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 56.6667 | 13 | 0 | 13 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l100_m0_e0 | het | 86.6667 | 76.4706 | 100.0000 | 85.7143 | 13 | 4 | 13 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 56.6667 | 13 | 0 | 13 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 61.7647 | 13 | 0 | 13 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I6_15 | map_l150_m2_e1 | het | 86.6667 | 81.2500 | 92.8571 | 94.6360 | 13 | 3 | 13 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 59.3750 | 13 | 0 | 13 | 0 | 0 | ||
| ndellapenna-hhga | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.2963 | 100.0000 | 92.8571 | 79.7101 | 13 | 0 | 13 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.2963 | 100.0000 | 92.8571 | 79.7101 | 13 | 0 | 13 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 67.9335 | 76.4706 | 61.1111 | 99.5774 | 13 | 4 | 11 | 7 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 81.2500 | 86.6667 | 76.4706 | 96.7803 | 13 | 2 | 13 | 4 | 4 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 92.8571 | 100.0000 | 86.6667 | 34.7826 | 13 | 0 | 13 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 86.6667 | 81.2500 | 92.8571 | 90.2778 | 13 | 3 | 13 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 86.6667 | 81.2500 | 92.8571 | 90.3448 | 13 | 3 | 13 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 43.4783 | 13 | 0 | 13 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 71.5596 | 68.4211 | 75.0000 | 82.8571 | 13 | 6 | 9 | 3 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 51.4512 | 86.6667 | 36.5854 | 95.2982 | 13 | 2 | 15 | 26 | 2 | 7.6923 | |
| qzeng-custom | INDEL | D16_PLUS | map_l150_m1_e0 | het | 66.4395 | 92.8571 | 51.7241 | 96.7232 | 13 | 1 | 15 | 14 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 57.5758 | 13 | 0 | 14 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | map_l250_m2_e0 | * | 66.1017 | 59.0909 | 75.0000 | 98.0276 | 13 | 9 | 15 | 5 | 2 | 40.0000 | |