PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
41851-41900 / 86044 show all | |||||||||||||||
| asubramanian-gatk | INDEL | I16_PLUS | map_l125_m1_e0 | * | 86.6667 | 86.6667 | 86.6667 | 96.4455 | 13 | 2 | 13 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | map_l125_m2_e0 | * | 86.6667 | 86.6667 | 86.6667 | 96.9450 | 13 | 2 | 13 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | map_l125_m2_e1 | * | 86.6667 | 86.6667 | 86.6667 | 96.9512 | 13 | 2 | 13 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 13 | 0 | 17 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 56.6667 | 13 | 0 | 13 | 0 | 0 | ||
| asubramanian-gatk | SNP | * | map_l100_m1_e0 | hetalt | 48.1481 | 31.7073 | 100.0000 | 90.9091 | 13 | 28 | 13 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 25.4902 | 0.0000 | 0.0000 | 13 | 38 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | map_l125_m1_e0 | het | 70.2703 | 65.0000 | 76.4706 | 88.5135 | 13 | 7 | 13 | 4 | 3 | 75.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l125_m2_e0 | het | 70.8171 | 65.0000 | 77.7778 | 88.4615 | 13 | 7 | 14 | 4 | 3 | 75.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l125_m2_e1 | het | 70.8171 | 65.0000 | 77.7778 | 88.6792 | 13 | 7 | 14 | 4 | 3 | 75.0000 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 18.5714 | 12.0370 | 40.6250 | 54.2857 | 13 | 95 | 13 | 19 | 3 | 15.7895 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 96.2963 | 100.0000 | 92.8571 | 50.0000 | 13 | 0 | 13 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 96.2963 | 100.0000 | 92.8571 | 87.6106 | 13 | 0 | 13 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 96.2963 | 100.0000 | 92.8571 | 58.8235 | 13 | 0 | 13 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | D1_5 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.3684 | 13 | 0 | 13 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 65.8537 | 13 | 0 | 14 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | map_l125_m1_e0 | * | 86.6667 | 86.6667 | 86.6667 | 96.6960 | 13 | 2 | 13 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I16_PLUS | map_l125_m2_e0 | * | 83.8710 | 86.6667 | 81.2500 | 96.8872 | 13 | 2 | 13 | 3 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I16_PLUS | map_l125_m2_e1 | * | 83.8710 | 86.6667 | 81.2500 | 96.8932 | 13 | 2 | 13 | 3 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l250_m0_e0 | het | 92.8571 | 86.6667 | 100.0000 | 98.5507 | 13 | 2 | 13 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 58.0645 | 13 | 0 | 13 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_l150_m1_e0 | het | 89.6552 | 86.6667 | 92.8571 | 95.4248 | 13 | 2 | 13 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l150_m2_e0 | het | 89.6552 | 86.6667 | 92.8571 | 95.8333 | 13 | 2 | 13 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 56.6667 | 13 | 0 | 13 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | map_l100_m1_e0 | hetalt | 48.1481 | 31.7073 | 100.0000 | 90.8451 | 13 | 28 | 13 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 96.2963 | 100.0000 | 92.8571 | 50.0000 | 13 | 0 | 13 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 92.8571 | 100.0000 | 86.6667 | 86.6071 | 13 | 0 | 13 | 2 | 1 | 50.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 92.8571 | 100.0000 | 86.6667 | 58.3333 | 13 | 0 | 13 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.3085 | 13 | 0 | 13 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 65.8537 | 13 | 0 | 14 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 58.0645 | 13 | 0 | 13 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | map_l150_m1_e0 | het | 89.6552 | 86.6667 | 92.8571 | 95.2703 | 13 | 2 | 13 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | map_l150_m2_e0 | het | 89.6552 | 86.6667 | 92.8571 | 95.7187 | 13 | 2 | 13 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 56.6667 | 13 | 0 | 13 | 0 | 0 | ||
| bgallagher-sentieon | SNP | ti | map_l100_m0_e0 | hetalt | 96.2963 | 92.8571 | 100.0000 | 65.7895 | 13 | 1 | 13 | 0 | 0 | ||
| anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 7.2626 | 0.0000 | 0.0000 | 13 | 166 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I1_5 | segdup | hetalt | 0.0000 | 27.0833 | 0.0000 | 0.0000 | 13 | 35 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 21.3115 | 0.0000 | 0.0000 | 13 | 48 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 8.6093 | 0.0000 | 0.0000 | 13 | 138 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I6_15 | map_l125_m1_e0 | homalt | 78.7879 | 86.6667 | 72.2222 | 87.0504 | 13 | 2 | 13 | 5 | 4 | 80.0000 | |
| anovak-vg | INDEL | I6_15 | map_l125_m2_e0 | homalt | 78.7879 | 86.6667 | 72.2222 | 89.0244 | 13 | 2 | 13 | 5 | 4 | 80.0000 | |
| anovak-vg | INDEL | I6_15 | map_l125_m2_e1 | homalt | 78.7879 | 86.6667 | 72.2222 | 89.3491 | 13 | 2 | 13 | 5 | 4 | 80.0000 | |
| anovak-vg | SNP | * | map_l100_m2_e0 | hetalt | 0.0000 | 30.9524 | 0.0000 | 0.0000 | 13 | 29 | 0 | 0 | 0 | ||
| anovak-vg | SNP | * | map_l100_m2_e1 | hetalt | 0.0000 | 30.2326 | 0.0000 | 0.0000 | 13 | 30 | 0 | 0 | 0 | ||
| anovak-vg | SNP | tv | map_l100_m2_e0 | hetalt | 0.0000 | 30.9524 | 0.0000 | 0.0000 | 13 | 29 | 0 | 0 | 0 | ||
| anovak-vg | SNP | tv | map_l100_m2_e1 | hetalt | 0.0000 | 30.2326 | 0.0000 | 0.0000 | 13 | 30 | 0 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 89.6552 | 81.2500 | 100.0000 | 97.7586 | 13 | 3 | 13 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 45.8333 | 13 | 0 | 13 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l150_m1_e0 | het | 89.6552 | 92.8571 | 86.6667 | 94.4444 | 13 | 1 | 13 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 96.2963 | 100.0000 | 92.8571 | 46.1538 | 13 | 0 | 13 | 1 | 1 | 100.0000 | |