PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
41801-41850 / 86044 show all | |||||||||||||||
| astatham-gatk | INDEL | D6_15 | map_l250_m2_e0 | het | 100.0000 | 100.0000 | 100.0000 | 97.0464 | 14 | 0 | 14 | 0 | 0 | ||
| astatham-gatk | INDEL | D6_15 | map_l250_m2_e1 | het | 100.0000 | 100.0000 | 100.0000 | 97.1253 | 14 | 0 | 14 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 96.5517 | 93.3333 | 100.0000 | 88.8000 | 14 | 1 | 14 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_l125_m1_e0 | homalt | 96.5517 | 93.3333 | 100.0000 | 92.8571 | 14 | 1 | 14 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_l125_m2_e0 | homalt | 96.5517 | 93.3333 | 100.0000 | 93.7220 | 14 | 1 | 14 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_l125_m2_e1 | homalt | 96.5517 | 93.3333 | 100.0000 | 93.9394 | 14 | 1 | 14 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_l150_m2_e1 | het | 90.3226 | 87.5000 | 93.3333 | 95.6647 | 14 | 2 | 14 | 1 | 1 | 100.0000 | |
| astatham-gatk | SNP | ti | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 65.0000 | 14 | 0 | 14 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | map_l250_m2_e0 | het | 100.0000 | 100.0000 | 100.0000 | 97.0213 | 14 | 0 | 14 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | map_l250_m2_e1 | het | 100.0000 | 100.0000 | 100.0000 | 97.1014 | 14 | 0 | 14 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 96.5517 | 93.3333 | 100.0000 | 88.7097 | 14 | 1 | 14 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I16_PLUS | map_l125_m1_e0 | * | 90.3226 | 93.3333 | 87.5000 | 96.4365 | 14 | 1 | 14 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_l125_m2_e0 | * | 87.5000 | 93.3333 | 82.3529 | 96.6862 | 14 | 1 | 14 | 3 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_l125_m2_e1 | * | 87.5000 | 93.3333 | 82.3529 | 96.6926 | 14 | 1 | 14 | 3 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | map_l125_m1_e0 | homalt | 96.5517 | 93.3333 | 100.0000 | 92.9293 | 14 | 1 | 14 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | map_l125_m2_e0 | homalt | 96.5517 | 93.3333 | 100.0000 | 93.7778 | 14 | 1 | 14 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | map_l125_m2_e1 | homalt | 96.5517 | 93.3333 | 100.0000 | 94.0171 | 14 | 1 | 14 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | map_l150_m2_e1 | het | 90.3226 | 87.5000 | 93.3333 | 95.5357 | 14 | 2 | 14 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | SNP | ti | map_l150_m1_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 70.8333 | 14 | 1 | 14 | 0 | 0 | ||
| bgallagher-sentieon | SNP | ti | map_l150_m2_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 75.0000 | 14 | 1 | 14 | 0 | 0 | ||
| bgallagher-sentieon | SNP | ti | map_l150_m2_e1 | hetalt | 96.5517 | 93.3333 | 100.0000 | 75.0000 | 14 | 1 | 14 | 0 | 0 | ||
| anovak-vg | INDEL | I16_PLUS | map_siren | homalt | 55.0459 | 66.6667 | 46.8750 | 67.3469 | 14 | 7 | 15 | 17 | 16 | 94.1176 | |
| anovak-vg | INDEL | I1_5 | map_l250_m0_e0 | * | 54.6638 | 58.3333 | 51.4286 | 98.2952 | 14 | 10 | 18 | 17 | 10 | 58.8235 | |
| anovak-vg | INDEL | I6_15 | func_cds | homalt | 75.6757 | 93.3333 | 63.6364 | 35.2941 | 14 | 1 | 14 | 8 | 7 | 87.5000 | |
| anovak-vg | INDEL | I6_15 | map_l125_m1_e0 | het | 53.8462 | 46.6667 | 63.6364 | 86.1925 | 14 | 16 | 21 | 12 | 2 | 16.6667 | |
| anovak-vg | INDEL | I6_15 | map_l125_m2_e0 | het | 53.8462 | 46.6667 | 63.6364 | 87.4046 | 14 | 16 | 21 | 12 | 2 | 16.6667 | |
| anovak-vg | INDEL | I6_15 | map_l125_m2_e1 | het | 53.8462 | 46.6667 | 63.6364 | 87.6866 | 14 | 16 | 21 | 12 | 2 | 16.6667 | |
| asubramanian-gatk | SNP | tv | map_l100_m2_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 91.2500 | 14 | 28 | 14 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 82.3529 | 93.3333 | 73.6842 | 95.2141 | 14 | 1 | 14 | 5 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l150_m1_e0 | het | 93.3333 | 100.0000 | 87.5000 | 96.1722 | 14 | 0 | 14 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 95.2055 | 14 | 1 | 14 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 96.5517 | 93.3333 | 100.0000 | 95.3177 | 14 | 1 | 14 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 93.3333 | 93.3333 | 93.3333 | 96.5358 | 14 | 1 | 14 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l150_m2_e0 | * | 84.8485 | 82.3529 | 87.5000 | 98.0198 | 14 | 3 | 14 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l150_m2_e0 | het | 87.5000 | 87.5000 | 87.5000 | 97.3813 | 14 | 2 | 14 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l150_m2_e1 | * | 82.3529 | 77.7778 | 87.5000 | 98.0535 | 14 | 4 | 14 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l150_m2_e1 | het | 87.5000 | 87.5000 | 87.5000 | 97.4235 | 14 | 2 | 14 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 95.9770 | 14 | 1 | 14 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 96.5517 | 93.3333 | 100.0000 | 96.0894 | 14 | 1 | 14 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | func_cds | homalt | 93.3333 | 93.3333 | 93.3333 | 40.0000 | 14 | 1 | 14 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l100_m0_e0 | het | 87.6827 | 82.3529 | 93.7500 | 94.3060 | 14 | 3 | 15 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | SNP | * | map_l100_m2_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 91.3043 | 14 | 28 | 14 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 96.2963 | 100.0000 | 92.8571 | 50.0000 | 13 | 0 | 13 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 96.2963 | 100.0000 | 92.8571 | 87.8261 | 13 | 0 | 13 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 96.2963 | 100.0000 | 92.8571 | 61.1111 | 13 | 0 | 13 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | D6_15 | map_l250_m2_e0 | het | 96.2963 | 92.8571 | 100.0000 | 97.6991 | 13 | 1 | 13 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l250_m2_e1 | het | 96.2963 | 92.8571 | 100.0000 | 97.7625 | 13 | 1 | 13 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 92.8571 | 86.6667 | 100.0000 | 89.3443 | 13 | 2 | 13 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 89.6552 | 81.2500 | 100.0000 | 83.5052 | 13 | 3 | 16 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.0377 | 13 | 0 | 18 | 0 | 0 | ||