PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
41651-41700 / 86044 show all | |||||||||||||||
| hfeng-pmm2 | INDEL | I6_15 | map_l125_m2_e1 | homalt | 96.5517 | 93.3333 | 100.0000 | 92.7835 | 14 | 1 | 14 | 0 | 0 | ||
| jlack-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 80.0000 | 87.5000 | 73.6842 | 95.5916 | 14 | 2 | 14 | 5 | 2 | 40.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 80.0000 | 87.5000 | 73.6842 | 95.6221 | 14 | 2 | 14 | 5 | 2 | 40.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l150_m1_e0 | * | 84.8485 | 93.3333 | 77.7778 | 97.3451 | 14 | 1 | 14 | 4 | 1 | 25.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l150_m1_e0 | het | 93.3333 | 100.0000 | 87.5000 | 96.9697 | 14 | 0 | 14 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l250_m2_e0 | het | 90.3226 | 100.0000 | 82.3529 | 97.3725 | 14 | 0 | 14 | 3 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l250_m2_e1 | het | 90.3226 | 100.0000 | 82.3529 | 97.4551 | 14 | 0 | 14 | 3 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 84.8485 | 93.3333 | 77.7778 | 93.2836 | 14 | 1 | 14 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l150_m1_e0 | het | 93.3333 | 100.0000 | 87.5000 | 93.4959 | 14 | 0 | 14 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 95.7447 | 14 | 1 | 14 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 96.5517 | 93.3333 | 100.0000 | 95.8580 | 14 | 1 | 14 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_l250_m2_e0 | het | 100.0000 | 100.0000 | 100.0000 | 94.6360 | 14 | 0 | 14 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_l250_m2_e1 | het | 100.0000 | 100.0000 | 100.0000 | 94.7955 | 14 | 0 | 14 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | tech_badpromoters | * | 90.3226 | 82.3529 | 100.0000 | 54.8387 | 14 | 3 | 14 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I16_PLUS | map_l125_m1_e0 | * | 90.3226 | 93.3333 | 87.5000 | 95.8115 | 14 | 1 | 14 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | map_l125_m2_e0 | * | 90.3226 | 93.3333 | 87.5000 | 96.3303 | 14 | 1 | 14 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | map_l125_m2_e1 | * | 90.3226 | 93.3333 | 87.5000 | 96.3470 | 14 | 1 | 14 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l100_m0_e0 | het | 80.0000 | 82.3529 | 77.7778 | 94.5619 | 14 | 3 | 14 | 4 | 0 | 0.0000 | |
| jlack-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 96.5517 | 93.3333 | 100.0000 | 96.0340 | 14 | 1 | 14 | 0 | 0 | ||
| jlack-gatk | SNP | ti | map_l150_m1_e0 | hetalt | 90.3226 | 93.3333 | 87.5000 | 86.0870 | 14 | 1 | 14 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | ti | map_l150_m2_e0 | hetalt | 90.3226 | 93.3333 | 87.5000 | 87.8788 | 14 | 1 | 14 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | ti | map_l150_m2_e1 | hetalt | 90.3226 | 93.3333 | 87.5000 | 87.8788 | 14 | 1 | 14 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | SNP | ti | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 74.5455 | 14 | 0 | 14 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 90.3226 | 93.3333 | 87.5000 | 94.3060 | 14 | 1 | 14 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l150_m1_e0 | * | 87.5000 | 93.3333 | 82.3529 | 95.5145 | 14 | 1 | 14 | 3 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 75.6757 | 60.8696 | 100.0000 | 71.4286 | 14 | 9 | 14 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | map_siren | homalt | 73.6842 | 66.6667 | 82.3529 | 88.5135 | 14 | 7 | 14 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l125_m0_e0 | * | 93.3333 | 93.3333 | 93.3333 | 93.6709 | 14 | 1 | 14 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | * | map_l100_m0_e0 | hetalt | 90.3226 | 87.5000 | 93.3333 | 79.1667 | 14 | 2 | 14 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | map_l100_m0_e0 | hetalt | 90.3226 | 87.5000 | 93.3333 | 79.1667 | 14 | 2 | 14 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | * | map_l150_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 96.6102 | 14 | 7 | 6 | 0 | 0 | ||
| qzeng-custom | INDEL | * | map_l150_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 96.5517 | 14 | 7 | 7 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 87.6827 | 82.3529 | 93.7500 | 99.9627 | 14 | 3 | 15 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l150_m1_e0 | het | 96.5517 | 100.0000 | 93.3333 | 90.7975 | 14 | 0 | 14 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l250_m2_e0 | het | 96.5517 | 100.0000 | 93.3333 | 96.0317 | 14 | 0 | 14 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l250_m2_e1 | het | 96.5517 | 100.0000 | 93.3333 | 96.1340 | 14 | 0 | 14 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 87.5000 | 77.7778 | 100.0000 | 78.9474 | 14 | 4 | 16 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l150_m1_e0 | * | 93.3333 | 93.3333 | 93.3333 | 90.2597 | 14 | 1 | 14 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | map_l250_m2_e0 | het | 100.0000 | 100.0000 | 100.0000 | 92.9245 | 14 | 0 | 15 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | map_l250_m2_e1 | het | 100.0000 | 100.0000 | 100.0000 | 93.1507 | 14 | 0 | 15 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 96.5517 | 93.3333 | 100.0000 | 65.9574 | 14 | 1 | 16 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 93.3333 | 87.5000 | 100.0000 | 68.4211 | 14 | 2 | 12 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l100_m1_e0 | het | 84.6512 | 77.7778 | 92.8571 | 70.8333 | 14 | 4 | 13 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l100_m2_e0 | het | 84.6512 | 77.7778 | 92.8571 | 73.0769 | 14 | 4 | 13 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l100_m2_e1 | het | 84.6512 | 77.7778 | 92.8571 | 73.0769 | 14 | 4 | 13 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | map_siren | homalt | 73.6842 | 66.6667 | 82.3529 | 70.6897 | 14 | 7 | 14 | 3 | 3 | 100.0000 | |
| ltrigg-rtg2 | SNP | * | map_l100_m0_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 64.1026 | 14 | 2 | 14 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 77.7778 | 63.6364 | 100.0000 | 78.0822 | 14 | 8 | 16 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 77.7778 | 63.6364 | 100.0000 | 80.7229 | 14 | 8 | 16 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 77.7778 | 63.6364 | 100.0000 | 81.6092 | 14 | 8 | 16 | 0 | 0 | ||