PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
41301-41350 / 86044 show all | |||||||||||||||
| cchapple-custom | INDEL | I16_PLUS | map_l125_m2_e1 | * | 96.9697 | 100.0000 | 94.1176 | 96.2555 | 15 | 0 | 16 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I16_PLUS | map_siren | hetalt | 0.0000 | 93.7500 | 0.0000 | 0.0000 | 15 | 1 | 0 | 0 | 0 | ||
| ckim-gatk | INDEL | I6_15 | func_cds | homalt | 96.7742 | 100.0000 | 93.7500 | 40.7407 | 15 | 0 | 15 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | I6_15 | map_l150_m2_e1 | het | 90.9091 | 93.7500 | 88.2353 | 96.5932 | 15 | 1 | 15 | 2 | 1 | 50.0000 | |
| ckim-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.2529 | 15 | 0 | 15 | 0 | 0 | ||
| ckim-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.2529 | 15 | 0 | 15 | 0 | 0 | ||
| ckim-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.9459 | 15 | 0 | 15 | 0 | 0 | ||
| ckim-gatk | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 96.7742 | 93.7500 | 100.0000 | 97.8754 | 15 | 1 | 15 | 0 | 0 | ||
| ckim-gatk | SNP | ti | map_l125_m1_e0 | hetalt | 76.9231 | 62.5000 | 100.0000 | 88.3721 | 15 | 9 | 15 | 0 | 0 | ||
| ckim-gatk | SNP | ti | map_l125_m2_e0 | hetalt | 76.9231 | 62.5000 | 100.0000 | 90.5063 | 15 | 9 | 15 | 0 | 0 | ||
| ckim-gatk | SNP | ti | map_l125_m2_e1 | hetalt | 76.9231 | 62.5000 | 100.0000 | 90.5063 | 15 | 9 | 15 | 0 | 0 | ||
| ckim-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.2529 | 15 | 0 | 15 | 0 | 0 | ||
| ckim-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.2529 | 15 | 0 | 15 | 0 | 0 | ||
| ckim-isaac | INDEL | * | map_l150_m2_e1 | hetalt | 78.9474 | 65.2174 | 100.0000 | 95.5414 | 15 | 8 | 14 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | func_cds | homalt | 96.7742 | 100.0000 | 93.7500 | 33.3333 | 15 | 0 | 15 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l125_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 89.5105 | 15 | 0 | 15 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | map_l125_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 90.7975 | 15 | 0 | 15 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | map_l125_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 91.0714 | 15 | 0 | 15 | 0 | 0 | ||
| cchapple-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 15 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 15 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | ti | map_l150_m1_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 15 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | ti | map_l150_m2_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 15 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | ti | map_l150_m2_e1 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 15 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 15 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 15 | 0 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | HG002complexvar | hetalt | 0.0000 | 6.0729 | 0.0000 | 0.0000 | 15 | 232 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | I1_5 | map_l150_m0_e0 | homalt | 34.6359 | 22.3881 | 76.4706 | 94.6875 | 15 | 52 | 13 | 4 | 1 | 25.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l100_m2_e0 | het | 37.0370 | 24.5902 | 75.0000 | 90.9910 | 15 | 46 | 15 | 5 | 5 | 100.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l100_m2_e1 | het | 37.0370 | 24.5902 | 75.0000 | 91.0314 | 15 | 46 | 15 | 5 | 5 | 100.0000 | |
| ckim-dragen | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.9697 | 100.0000 | 94.1176 | 90.5556 | 15 | 0 | 16 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.9697 | 100.0000 | 94.1176 | 90.5556 | 15 | 0 | 16 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.7612 | 15 | 0 | 15 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 90.9091 | 93.7500 | 88.2353 | 96.7118 | 15 | 1 | 15 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 90.9091 | 93.7500 | 88.2353 | 96.7433 | 15 | 1 | 15 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l150_m1_e0 | * | 90.9091 | 100.0000 | 83.3333 | 97.5904 | 15 | 0 | 15 | 3 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 78.9474 | 93.7500 | 68.1818 | 96.2901 | 15 | 1 | 15 | 7 | 2 | 28.5714 | |
| ckim-dragen | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 78.9474 | 93.7500 | 68.1818 | 96.3272 | 15 | 1 | 15 | 7 | 2 | 28.5714 | |
| ckim-dragen | INDEL | D16_PLUS | map_l150_m2_e0 | * | 81.0811 | 88.2353 | 75.0000 | 97.9079 | 15 | 2 | 15 | 5 | 1 | 20.0000 | |
| ckim-dragen | INDEL | D16_PLUS | map_l150_m2_e0 | het | 83.3333 | 93.7500 | 75.0000 | 97.2752 | 15 | 1 | 15 | 5 | 1 | 20.0000 | |
| ckim-dragen | INDEL | D16_PLUS | map_l150_m2_e1 | * | 76.9231 | 83.3333 | 71.4286 | 97.8373 | 15 | 3 | 15 | 6 | 2 | 33.3333 | |
| ckim-dragen | INDEL | D16_PLUS | map_l150_m2_e1 | het | 81.0811 | 93.7500 | 71.4286 | 97.1812 | 15 | 1 | 15 | 6 | 2 | 33.3333 | |
| ckim-dragen | INDEL | I16_PLUS | map_siren | hetalt | 96.7742 | 93.7500 | 100.0000 | 86.9919 | 15 | 1 | 16 | 0 | 0 | ||
| ckim-dragen | INDEL | I6_15 | func_cds | homalt | 96.7742 | 100.0000 | 93.7500 | 40.7407 | 15 | 0 | 15 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | map_l125_m1_e0 | homalt | 96.7742 | 100.0000 | 93.7500 | 91.7098 | 15 | 0 | 15 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I6_15 | map_l125_m2_e0 | homalt | 96.7742 | 100.0000 | 93.7500 | 92.6267 | 15 | 0 | 15 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I6_15 | map_l125_m2_e1 | homalt | 96.7742 | 100.0000 | 93.7500 | 92.8571 | 15 | 0 | 15 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I6_15 | map_l150_m2_e1 | het | 96.7742 | 93.7500 | 100.0000 | 95.8333 | 15 | 1 | 15 | 0 | 0 | ||
| ckim-dragen | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.9697 | 100.0000 | 94.1176 | 90.5556 | 15 | 0 | 16 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.9697 | 100.0000 | 94.1176 | 90.5556 | 15 | 0 | 16 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | ti | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.7692 | 15 | 0 | 15 | 0 | 0 | ||