PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
41101-41150 / 86044 show all | |||||||||||||||
| jlack-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.1406 | 15 | 0 | 15 | 0 | 0 | ||
| jlack-gatk | SNP | tv | map_l100_m0_e0 | hetalt | 90.9091 | 93.7500 | 88.2353 | 86.7188 | 15 | 1 | 15 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 96.7742 | 93.7500 | 100.0000 | 99.8986 | 15 | 1 | 15 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 76.5625 | 15 | 0 | 15 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 79.7297 | 15 | 0 | 15 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 79.7297 | 15 | 0 | 15 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.1176 | 15 | 0 | 15 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.1176 | 15 | 0 | 15 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.6216 | 15 | 0 | 15 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 90.9091 | 93.7500 | 88.2353 | 94.9102 | 15 | 1 | 15 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 90.9091 | 93.7500 | 88.2353 | 94.9704 | 15 | 1 | 15 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l150_m2_e0 | het | 90.9091 | 93.7500 | 88.2353 | 94.6541 | 15 | 1 | 15 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l150_m2_e1 | het | 90.9091 | 93.7500 | 88.2353 | 94.7368 | 15 | 1 | 15 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.6443 | 15 | 0 | 15 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 85.7143 | 93.7500 | 78.9474 | 93.8907 | 15 | 1 | 15 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 85.7143 | 93.7500 | 78.9474 | 93.9683 | 15 | 1 | 15 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l150_m1_e0 | * | 90.9091 | 100.0000 | 83.3333 | 94.8571 | 15 | 0 | 15 | 3 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 100.0000 | 100.0000 | 100.0000 | 87.5000 | 15 | 0 | 15 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I16_PLUS | map_siren | hetalt | 96.7742 | 93.7500 | 100.0000 | 87.9699 | 15 | 1 | 16 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 40.0000 | 15 | 0 | 15 | 0 | 0 | ||
| hfeng-pmm1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.0945 | 15 | 0 | 15 | 0 | 0 | ||
| hfeng-pmm1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.0945 | 15 | 0 | 15 | 0 | 0 | ||
| hfeng-pmm1 | SNP | ti | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 76.5625 | 15 | 0 | 15 | 0 | 0 | ||
| hfeng-pmm1 | SNP | ti | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 79.7297 | 15 | 0 | 15 | 0 | 0 | ||
| hfeng-pmm1 | SNP | ti | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 79.7297 | 15 | 0 | 15 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.0945 | 15 | 0 | 15 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.0945 | 15 | 0 | 15 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 80.0000 | 100.0000 | 66.6667 | 97.9631 | 15 | 0 | 14 | 7 | 7 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | tech_badpromoters | * | 90.9091 | 88.2353 | 93.7500 | 52.9412 | 15 | 2 | 15 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 41.8118 | 28.3019 | 80.0000 | 60.9375 | 15 | 38 | 20 | 5 | 5 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | map_siren | het | 46.8750 | 30.6122 | 100.0000 | 69.8630 | 15 | 34 | 22 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 78.9474 | 65.2174 | 100.0000 | 7.6923 | 15 | 8 | 12 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | map_l125_m1_e0 | homalt | 96.7742 | 100.0000 | 93.7500 | 84.9057 | 15 | 0 | 15 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_l125_m2_e0 | homalt | 96.7742 | 100.0000 | 93.7500 | 86.9919 | 15 | 0 | 15 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_l125_m2_e1 | homalt | 96.7742 | 100.0000 | 93.7500 | 87.5969 | 15 | 0 | 15 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.8525 | 15 | 0 | 15 | 0 | 0 | ||
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.8525 | 15 | 0 | 15 | 0 | 0 | ||
| gduggal-bwafb | SNP | ti | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 77.2727 | 15 | 0 | 15 | 0 | 0 | ||
| gduggal-bwafb | SNP | ti | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.0000 | 15 | 0 | 15 | 0 | 0 | ||
| gduggal-bwafb | SNP | ti | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.2632 | 15 | 0 | 15 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.8525 | 15 | 0 | 15 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.8525 | 15 | 0 | 15 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 33.7079 | 21.1268 | 83.3333 | 85.3659 | 15 | 56 | 15 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 8.1688 | 4.2857 | 86.9565 | 86.0606 | 15 | 335 | 20 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 54.6624 | 38.4615 | 94.4444 | 73.7226 | 15 | 24 | 34 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 55.9476 | 40.5405 | 90.2439 | 86.2416 | 15 | 22 | 37 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | tech_badpromoters | * | 93.7500 | 88.2353 | 100.0000 | 52.9412 | 15 | 2 | 16 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 39.7351 | 28.3019 | 66.6667 | 55.4455 | 15 | 38 | 30 | 15 | 15 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_siren | het | 43.6447 | 30.6122 | 76.0000 | 62.1212 | 15 | 34 | 19 | 6 | 6 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l250_m0_e0 | het | 96.6667 | 100.0000 | 93.5484 | 96.7876 | 15 | 0 | 29 | 2 | 2 | 100.0000 | |