PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
40951-41000 / 86044 show all | |||||||||||||||
| astatham-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 83.1579 | 16 | 0 | 16 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 100.0000 | 100.0000 | 100.0000 | 82.2222 | 16 | 0 | 16 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | map_l100_m1_e0 | het | 91.4286 | 88.8889 | 94.1176 | 94.5860 | 16 | 2 | 16 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I16_PLUS | map_l100_m2_e0 | het | 88.8889 | 88.8889 | 88.8889 | 95.1482 | 16 | 2 | 16 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | I16_PLUS | map_l100_m2_e1 | het | 88.8889 | 88.8889 | 88.8889 | 95.1613 | 16 | 2 | 16 | 2 | 1 | 50.0000 | |
| bgallagher-sentieon | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.8731 | 16 | 0 | 16 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D16_PLUS | map_l150_m2_e0 | het | 94.1176 | 100.0000 | 88.8889 | 96.3928 | 16 | 0 | 16 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l150_m2_e1 | het | 94.1176 | 100.0000 | 88.8889 | 96.4427 | 16 | 0 | 16 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 83.1579 | 16 | 0 | 16 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 100.0000 | 100.0000 | 100.0000 | 82.6087 | 16 | 0 | 16 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 96.9697 | 94.1176 | 100.0000 | 97.2556 | 16 | 1 | 16 | 0 | 0 | ||
| anovak-vg | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 18.8235 | 0.0000 | 0.0000 | 16 | 69 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I6_15 | map_l150_m2_e1 | * | 60.6316 | 59.2593 | 62.0690 | 91.8310 | 16 | 11 | 18 | 11 | 3 | 27.2727 | |
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.8842 | 16 | 0 | 16 | 0 | 0 | ||
| anovak-vg | INDEL | * | tech_badpromoters | het | 55.6267 | 41.0256 | 86.3636 | 38.8889 | 16 | 23 | 19 | 3 | 3 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 29.0909 | 0.0000 | 0.0000 | 16 | 39 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 16.4948 | 0.0000 | 0.0000 | 16 | 81 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 0.0000 | 21.9178 | 0.0000 | 0.0000 | 16 | 57 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 11.3706 | 7.7670 | 21.2121 | 59.0062 | 16 | 190 | 14 | 52 | 10 | 19.2308 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 17.8914 | 14.8148 | 22.5806 | 56.6434 | 16 | 92 | 14 | 48 | 8 | 16.6667 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 96.9697 | 100.0000 | 94.1176 | 83.9623 | 16 | 0 | 16 | 1 | 0 | 0.0000 | |
| astatham-gatk | SNP | * | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 68.0000 | 16 | 0 | 16 | 0 | 0 | ||
| astatham-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 96.9697 | 94.1176 | 100.0000 | 97.2835 | 16 | 1 | 16 | 0 | 0 | ||
| astatham-gatk | SNP | tv | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 68.0000 | 16 | 0 | 16 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | map_l150_m2_e0 | het | 96.9697 | 100.0000 | 94.1176 | 90.2857 | 16 | 0 | 16 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l150_m2_e1 | het | 96.9697 | 100.0000 | 94.1176 | 90.4494 | 16 | 0 | 16 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D6_15 | tech_badpromoters | * | 96.9697 | 94.1176 | 100.0000 | 54.2857 | 16 | 1 | 16 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | map_l150_m2_e0 | het | 96.9697 | 100.0000 | 94.1176 | 97.5362 | 16 | 0 | 16 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l150_m2_e1 | het | 96.9697 | 100.0000 | 94.1176 | 97.5818 | 16 | 0 | 16 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 83.1579 | 16 | 0 | 16 | 0 | 0 | ||
| ckim-vqsr | INDEL | I16_PLUS | map_siren | hetalt | 100.0000 | 100.0000 | 100.0000 | 84.9558 | 16 | 0 | 17 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l100_m0_e0 | het | 96.9697 | 94.1176 | 100.0000 | 95.2522 | 16 | 1 | 16 | 0 | 0 | ||
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 83.1579 | 16 | 0 | 16 | 0 | 0 | ||
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 100.0000 | 100.0000 | 100.0000 | 82.9787 | 16 | 0 | 16 | 0 | 0 | ||
| dgrover-gatk | INDEL | I16_PLUS | map_siren | hetalt | 100.0000 | 100.0000 | 100.0000 | 87.1212 | 16 | 0 | 17 | 0 | 0 | ||
| dgrover-gatk | SNP | * | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 69.8113 | 16 | 0 | 16 | 0 | 0 | ||
| dgrover-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 96.9697 | 94.1176 | 100.0000 | 97.4400 | 16 | 1 | 16 | 0 | 0 | ||
| dgrover-gatk | SNP | tv | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 69.8113 | 16 | 0 | 16 | 0 | 0 | ||
| egarrison-hhga | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 84.4720 | 80.0000 | 89.4737 | 99.9555 | 16 | 4 | 17 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l125_m0_e0 | * | 50.0000 | 34.0426 | 94.1176 | 94.5860 | 16 | 31 | 16 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l125_m1_e0 | homalt | 64.0000 | 47.0588 | 100.0000 | 75.7576 | 16 | 18 | 16 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | tech_badpromoters | * | 96.9697 | 94.1176 | 100.0000 | 48.3871 | 16 | 1 | 16 | 0 | 0 | ||
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 88.8889 | 80.0000 | 100.0000 | 44.8276 | 16 | 4 | 16 | 0 | 0 | ||
| ckim-isaac | INDEL | I16_PLUS | segdup | het | 78.0488 | 66.6667 | 94.1176 | 92.7039 | 16 | 8 | 16 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 88.8889 | 84.2105 | 94.1176 | 91.7476 | 16 | 3 | 16 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 88.8889 | 84.2105 | 94.1176 | 92.0188 | 16 | 3 | 16 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.8863 | 16 | 0 | 16 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | map_l150_m2_e0 | * | 88.8889 | 94.1176 | 84.2105 | 97.3464 | 16 | 1 | 16 | 3 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l150_m2_e1 | * | 86.4865 | 88.8889 | 84.2105 | 97.3973 | 16 | 2 | 16 | 3 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 94.1176 | 94.1176 | 94.1176 | 99.4642 | 16 | 1 | 16 | 1 | 0 | 0.0000 | |