PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
40451-40500 / 86044 show all | |||||||||||||||
| ckim-gatk | SNP | * | map_l125_m2_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 92.8854 | 18 | 12 | 18 | 0 | 0 | ||
| ckim-gatk | SNP | * | map_l125_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 92.8854 | 18 | 12 | 18 | 0 | 0 | ||
| ckim-gatk | SNP | tv | map_l125_m1_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 91.3462 | 18 | 12 | 18 | 0 | 0 | ||
| ckim-gatk | SNP | tv | map_l125_m2_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 92.8854 | 18 | 12 | 18 | 0 | 0 | ||
| ckim-gatk | SNP | tv | map_l125_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 92.8854 | 18 | 12 | 18 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 51.4286 | 17 | 0 | 17 | 0 | 0 | ||
| ckim-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 97.1429 | 94.4444 | 100.0000 | 83.4783 | 17 | 1 | 19 | 0 | 0 | ||
| ckim-gatk | INDEL | I16_PLUS | map_l100_m1_e0 | het | 94.4444 | 94.4444 | 94.4444 | 95.2756 | 17 | 1 | 17 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l100_m2_e0 | het | 91.8919 | 94.4444 | 89.4737 | 95.6522 | 17 | 1 | 17 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l100_m2_e1 | het | 91.8919 | 94.4444 | 89.4737 | 95.6720 | 17 | 1 | 17 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.0612 | 17 | 0 | 17 | 0 | 0 | ||
| ckim-dragen | INDEL | * | map_l150_m1_e0 | hetalt | 89.4737 | 80.9524 | 100.0000 | 94.9555 | 17 | 4 | 17 | 0 | 0 | ||
| ckim-dragen | INDEL | * | map_l150_m2_e0 | hetalt | 89.4737 | 80.9524 | 100.0000 | 95.6410 | 17 | 4 | 17 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 66.2151 | 70.8333 | 62.1622 | 50.0000 | 17 | 7 | 23 | 14 | 14 | 100.0000 | |
| ciseli-custom | INDEL | D6_15 | map_l100_m0_e0 | homalt | 55.7377 | 70.8333 | 45.9459 | 88.1029 | 17 | 7 | 17 | 20 | 19 | 95.0000 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 33.6634 | 37.7778 | 30.3571 | 77.6000 | 17 | 28 | 17 | 39 | 34 | 87.1795 | |
| ciseli-custom | INDEL | I6_15 | func_cds | * | 53.1250 | 39.5349 | 80.9524 | 32.2581 | 17 | 26 | 17 | 4 | 4 | 100.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l150_m2_e0 | * | 91.8919 | 100.0000 | 85.0000 | 97.7503 | 17 | 0 | 17 | 3 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l150_m2_e1 | * | 89.4737 | 94.4444 | 85.0000 | 97.7925 | 17 | 1 | 17 | 3 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 89.4737 | 0.0000 | 0.0000 | 17 | 2 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 0.0000 | 65.3846 | 0.0000 | 0.0000 | 17 | 9 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 0.0000 | 65.3846 | 0.0000 | 0.0000 | 17 | 9 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 0.0000 | 89.4737 | 0.0000 | 0.0000 | 17 | 2 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 0.0000 | 89.4737 | 0.0000 | 0.0000 | 17 | 2 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 0.0000 | 85.0000 | 0.0000 | 0.0000 | 17 | 3 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 52.7778 | 17 | 0 | 17 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | map_l100_m1_e0 | het | 90.8397 | 94.4444 | 87.5000 | 92.9204 | 17 | 1 | 21 | 3 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I16_PLUS | map_l100_m2_e0 | het | 90.8397 | 94.4444 | 87.5000 | 93.8931 | 17 | 1 | 21 | 3 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I16_PLUS | map_l100_m2_e1 | het | 90.8397 | 94.4444 | 87.5000 | 94.0299 | 17 | 1 | 21 | 3 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D16_PLUS | map_l100_m0_e0 | het | 74.6228 | 89.4737 | 64.0000 | 97.0449 | 17 | 2 | 16 | 9 | 1 | 11.1111 | |
| ckim-dragen | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 94.4444 | 89.4737 | 100.0000 | 79.7619 | 17 | 2 | 17 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 94.4444 | 89.4737 | 100.0000 | 82.2917 | 17 | 2 | 17 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 94.4444 | 89.4737 | 100.0000 | 84.5455 | 17 | 2 | 17 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 91.8919 | 85.0000 | 100.0000 | 84.9558 | 17 | 3 | 17 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 17 | 0 | 17 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | map_l100_m1_e0 | het | 91.8919 | 94.4444 | 89.4737 | 93.6242 | 17 | 1 | 17 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | map_l100_m2_e0 | het | 91.8919 | 94.4444 | 89.4737 | 94.6328 | 17 | 1 | 17 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | map_l100_m2_e1 | het | 91.8919 | 94.4444 | 89.4737 | 94.7075 | 17 | 1 | 17 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 0.0000 | 89.4737 | 0.0000 | 0.0000 | 17 | 2 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 0.0000 | 89.4737 | 0.0000 | 0.0000 | 17 | 2 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 36.2774 | 80.9524 | 23.3766 | 99.8723 | 17 | 4 | 18 | 59 | 32 | 54.2373 | |
| hfeng-pmm3 | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 94.4444 | 89.4737 | 100.0000 | 81.5217 | 17 | 2 | 17 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I16_PLUS | map_l100_m1_e0 | het | 94.4444 | 94.4444 | 94.4444 | 92.0000 | 17 | 1 | 17 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l100_m2_e0 | het | 94.4444 | 94.4444 | 94.4444 | 93.2331 | 17 | 1 | 17 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l100_m2_e1 | het | 94.4444 | 94.4444 | 94.4444 | 93.2836 | 17 | 1 | 17 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.7660 | 17 | 0 | 17 | 0 | 0 | ||
| hfeng-pmm3 | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 75.5556 | 62.9630 | 94.4444 | 97.9310 | 17 | 10 | 17 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l150_m2_e0 | * | 89.4737 | 100.0000 | 80.9524 | 95.0237 | 17 | 0 | 17 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l150_m2_e1 | * | 87.1795 | 94.4444 | 80.9524 | 95.1276 | 17 | 1 | 17 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | map_l100_m1_e0 | het | 94.4444 | 94.4444 | 94.4444 | 93.1034 | 17 | 1 | 17 | 1 | 0 | 0.0000 | |