PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
40251-40300 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | SNP | ti | map_l100_m2_e1 | hetalt | 73.4694 | 58.0645 | 100.0000 | 89.2857 | 18 | 13 | 18 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | map_siren | homalt | 57.1429 | 52.9412 | 62.0690 | 85.5721 | 18 | 16 | 18 | 11 | 6 | 54.5455 | |
| eyeh-varpipe | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 50.4854 | 35.2941 | 88.6364 | 93.5007 | 18 | 33 | 39 | 5 | 3 | 60.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 69.2308 | 54.5455 | 94.7368 | 83.3333 | 18 | 15 | 36 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 61.4334 | 48.6486 | 83.3333 | 60.0000 | 18 | 19 | 15 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 57.1429 | 66.6667 | 50.0000 | 95.6522 | 18 | 9 | 1 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 94.8498 | 18 | 1 | 12 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 97.2973 | 94.7368 | 100.0000 | 94.8718 | 18 | 1 | 12 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 32.7273 | 19.5652 | 100.0000 | 62.2222 | 18 | 74 | 17 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l250_m0_e0 | het | 50.7042 | 33.9623 | 100.0000 | 99.5919 | 18 | 35 | 18 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | tech_badpromoters | homalt | 70.5882 | 54.5455 | 100.0000 | 70.0000 | 18 | 15 | 18 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_siren | homalt | 69.2308 | 52.9412 | 100.0000 | 91.3043 | 18 | 16 | 18 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | map_l250_m0_e0 | * | 56.2500 | 39.1304 | 100.0000 | 99.3978 | 18 | 28 | 18 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | HG002compoundhet | homalt | 37.8738 | 75.0000 | 25.3333 | 81.1558 | 18 | 6 | 19 | 56 | 53 | 94.6429 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l100_m0_e0 | het | 85.1182 | 94.7368 | 77.2727 | 96.5300 | 18 | 1 | 17 | 5 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | tech_badpromoters | * | 97.2973 | 94.7368 | 100.0000 | 48.5714 | 18 | 1 | 18 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D16_PLUS | map_l125_m1_e0 | het | 90.0000 | 90.0000 | 90.0000 | 97.3545 | 18 | 2 | 18 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l125_m2_e0 | het | 87.8049 | 90.0000 | 85.7143 | 97.6325 | 18 | 2 | 18 | 3 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l125_m2_e1 | het | 87.8049 | 90.0000 | 85.7143 | 97.6796 | 18 | 2 | 18 | 3 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D1_5 | tech_badpromoters | * | 97.2973 | 94.7368 | 100.0000 | 48.5714 | 18 | 1 | 18 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 86.0140 | 18 | 0 | 20 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | segdup | homalt | 97.2973 | 94.7368 | 100.0000 | 95.0954 | 18 | 1 | 18 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | map_l150_m1_e0 | * | 81.8182 | 72.0000 | 94.7368 | 96.4618 | 18 | 7 | 18 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l150_m2_e0 | * | 81.8182 | 72.0000 | 94.7368 | 96.8333 | 18 | 7 | 18 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | I16_PLUS | segdup | * | 48.3031 | 38.2979 | 65.3846 | 88.6463 | 18 | 29 | 17 | 9 | 5 | 55.5556 | |
| anovak-vg | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 15.2866 | 9.6774 | 36.3636 | 52.5862 | 18 | 168 | 20 | 35 | 30 | 85.7143 | |
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 55.3846 | 42.8571 | 78.2609 | 99.2474 | 18 | 24 | 18 | 5 | 5 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | map_l100_m0_e0 | homalt | 81.8182 | 75.0000 | 90.0000 | 88.7640 | 18 | 6 | 18 | 2 | 2 | 100.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 97.2973 | 94.7368 | 100.0000 | 72.5000 | 18 | 1 | 22 | 0 | 0 | ||
| astatham-gatk | INDEL | D1_5 | tech_badpromoters | * | 97.2973 | 94.7368 | 100.0000 | 48.5714 | 18 | 1 | 18 | 0 | 0 | ||
| astatham-gatk | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 82.3529 | 18 | 1 | 18 | 0 | 0 | ||
| astatham-gatk | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 85.1240 | 18 | 1 | 18 | 0 | 0 | ||
| astatham-gatk | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 86.9565 | 18 | 1 | 18 | 0 | 0 | ||
| astatham-gatk | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 94.7368 | 90.0000 | 100.0000 | 87.3239 | 18 | 2 | 18 | 0 | 0 | ||
| astatham-gatk | INDEL | D6_15 | map_l250_m1_e0 | * | 100.0000 | 100.0000 | 100.0000 | 96.9748 | 18 | 0 | 18 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 84.9624 | 18 | 0 | 20 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 95.1923 | 94.7368 | 95.6522 | 72.2892 | 18 | 1 | 22 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 94.7368 | 94.7368 | 94.7368 | 80.8081 | 18 | 1 | 18 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 84.4828 | 18 | 1 | 18 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 86.3636 | 18 | 1 | 18 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 94.7368 | 90.0000 | 100.0000 | 86.7647 | 18 | 2 | 18 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | map_l250_m1_e0 | * | 100.0000 | 100.0000 | 100.0000 | 96.9595 | 18 | 0 | 18 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 84.8485 | 18 | 0 | 20 | 0 | 0 | ||
| bgallagher-sentieon | SNP | * | map_l150_m1_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 76.3158 | 18 | 2 | 18 | 0 | 0 | ||
| bgallagher-sentieon | SNP | * | map_l150_m2_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 80.0000 | 18 | 2 | 18 | 0 | 0 | ||
| bgallagher-sentieon | SNP | * | map_l150_m2_e1 | hetalt | 94.7368 | 90.0000 | 100.0000 | 80.0000 | 18 | 2 | 18 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | map_l150_m1_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 76.3158 | 18 | 2 | 18 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | map_l150_m2_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 80.0000 | 18 | 2 | 18 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | map_l150_m2_e1 | hetalt | 94.7368 | 90.0000 | 100.0000 | 80.0000 | 18 | 2 | 18 | 0 | 0 | ||
| cchapple-custom | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 94.7368 | 90.0000 | 100.0000 | 99.4547 | 18 | 2 | 18 | 0 | 0 | ||