PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
39651-39700 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 28.2517 | 18.8679 | 56.2044 | 48.1061 | 20 | 86 | 77 | 60 | 60 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | segdup | hetalt | 56.8182 | 41.6667 | 89.2857 | 96.7175 | 20 | 28 | 25 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | SNP | * | map_l150_m1_e0 | hetalt | 99.5781 | 100.0000 | 99.1597 | 73.6142 | 20 | 0 | 118 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | map_l150_m2_e0 | hetalt | 99.6078 | 100.0000 | 99.2188 | 75.1456 | 20 | 0 | 127 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | map_l150_m2_e1 | hetalt | 99.6139 | 100.0000 | 99.2308 | 75.0480 | 20 | 0 | 129 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | map_l150_m1_e0 | hetalt | 99.2248 | 100.0000 | 98.4615 | 76.1905 | 20 | 0 | 64 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | map_l150_m2_e0 | hetalt | 99.2908 | 100.0000 | 98.5915 | 77.3885 | 20 | 0 | 70 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | map_l150_m2_e1 | hetalt | 99.3103 | 100.0000 | 98.6301 | 77.1875 | 20 | 0 | 72 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 55.5556 | 40.0000 | 90.9091 | 92.7869 | 20 | 30 | 20 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | * | tech_badpromoters | homalt | 75.4717 | 60.6061 | 100.0000 | 54.7619 | 20 | 13 | 19 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.2482 | 0.0000 | 0.0000 | 20 | 8039 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 0.2482 | 0.0000 | 0.0000 | 20 | 8039 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 15.7742 | 14.0845 | 17.9245 | 45.0777 | 20 | 122 | 19 | 87 | 86 | 98.8506 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 29.7340 | 83.3333 | 18.0952 | 44.1489 | 20 | 4 | 19 | 86 | 85 | 98.8372 | |
| gduggal-bwavard | INDEL | D6_15 | map_l150_m0_e0 | het | 78.4314 | 100.0000 | 64.5161 | 94.8074 | 20 | 0 | 20 | 11 | 7 | 63.6364 | |
| gduggal-bwavard | INDEL | D6_15 | map_l150_m1_e0 | homalt | 86.9565 | 76.9231 | 100.0000 | 86.0294 | 20 | 6 | 19 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 60.5578 | 44.4444 | 95.0000 | 68.2540 | 20 | 25 | 19 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 97.5610 | 100.0000 | 95.2381 | 99.3548 | 20 | 0 | 20 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | * | map_l150_m1_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 94.8187 | 20 | 1 | 20 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | map_l150_m2_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 95.5056 | 20 | 1 | 20 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 70.8861 | 57.1429 | 93.3333 | 87.7049 | 20 | 15 | 14 | 1 | 1 | 100.0000 | |
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 63.4921 | 48.7805 | 90.9091 | 88.2353 | 20 | 21 | 20 | 2 | 2 | 100.0000 | |
| ckim-isaac | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 64.8148 | 55.5556 | 77.7778 | 89.0688 | 20 | 16 | 21 | 6 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D16_PLUS | map_l100_m1_e0 | * | 35.2996 | 22.9885 | 76.0000 | 91.9094 | 20 | 67 | 19 | 6 | 3 | 50.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l250_m1_e0 | homalt | 51.9481 | 35.0877 | 100.0000 | 93.7695 | 20 | 37 | 20 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | tech_badpromoters | * | 95.2381 | 90.9091 | 100.0000 | 51.2195 | 20 | 2 | 20 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 54.9313 | 39.2157 | 91.6667 | 45.4545 | 20 | 31 | 11 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l125_m1_e0 | het | 95.2381 | 100.0000 | 90.9091 | 89.9543 | 20 | 0 | 20 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l125_m2_e0 | het | 95.2381 | 100.0000 | 90.9091 | 90.5983 | 20 | 0 | 20 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l125_m2_e1 | het | 95.2381 | 100.0000 | 90.9091 | 90.7950 | 20 | 0 | 20 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 67.6759 | 54.0541 | 90.4762 | 58.8235 | 20 | 17 | 19 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 67.7966 | 86.9565 | 55.5556 | 81.0526 | 20 | 3 | 20 | 16 | 11 | 68.7500 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 76.9231 | 90.9091 | 66.6667 | 80.1325 | 20 | 2 | 20 | 10 | 7 | 70.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l100_m1_e0 | * | 81.6327 | 76.9231 | 86.9565 | 87.7660 | 20 | 6 | 20 | 3 | 1 | 33.3333 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l100_m2_e0 | * | 81.6327 | 76.9231 | 86.9565 | 89.9123 | 20 | 6 | 20 | 3 | 1 | 33.3333 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l100_m2_e1 | * | 81.6327 | 76.9231 | 86.9565 | 90.0433 | 20 | 6 | 20 | 3 | 1 | 33.3333 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l125_m1_e0 | het | 97.5610 | 100.0000 | 95.2381 | 97.4699 | 20 | 0 | 20 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l125_m2_e0 | het | 97.5610 | 100.0000 | 95.2381 | 97.8615 | 20 | 0 | 20 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l125_m2_e1 | het | 97.5610 | 100.0000 | 95.2381 | 97.9084 | 20 | 0 | 20 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D6_15 | map_l150_m0_e0 | het | 95.2381 | 100.0000 | 90.9091 | 96.1938 | 20 | 0 | 20 | 2 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | map_siren | homalt | 97.5610 | 95.2381 | 100.0000 | 95.6236 | 20 | 1 | 20 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 80.0000 | 20 | 2 | 20 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 81.6514 | 20 | 2 | 20 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 95.2381 | 90.9091 | 100.0000 | 82.3009 | 20 | 2 | 20 | 0 | 0 | ||
| egarrison-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 85.1064 | 74.0741 | 100.0000 | 88.3721 | 20 | 7 | 5 | 0 | 0 | ||
| egarrison-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 93.0233 | 86.9565 | 100.0000 | 13.0435 | 20 | 3 | 20 | 0 | 0 | ||
| egarrison-hhga | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 85.1064 | 76.9231 | 95.2381 | 94.1989 | 20 | 6 | 20 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 3.1209 | 1.5974 | 67.3913 | 86.5889 | 20 | 1232 | 31 | 15 | 10 | 66.6667 | |
| dgrover-gatk | INDEL | D6_15 | map_l150_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 95.5056 | 20 | 0 | 20 | 0 | 0 | ||
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 65.5172 | 20 | 0 | 20 | 0 | 0 | ||