PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
39551-39600 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | INDEL | I1_5 | map_l250_m0_e0 | * | 89.3617 | 87.5000 | 91.3043 | 97.4099 | 21 | 3 | 21 | 2 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 84.0000 | 87.5000 | 80.7692 | 72.3404 | 21 | 3 | 21 | 5 | 5 | 100.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 91.3043 | 95.4545 | 87.5000 | 81.2500 | 21 | 1 | 21 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l150_m2_e1 | * | 84.0000 | 77.7778 | 91.3043 | 94.3902 | 21 | 6 | 21 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | INDEL | * | map_l125_m2_e0 | hetalt | 0.0000 | 50.0000 | 0.0000 | 0.0000 | 21 | 21 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | map_l125_m2_e1 | hetalt | 0.0000 | 48.8372 | 0.0000 | 0.0000 | 21 | 22 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | map_l250_m0_e0 | homalt | 91.3043 | 84.0000 | 100.0000 | 96.4427 | 21 | 4 | 36 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 1.6229 | 0.0000 | 0.0000 | 21 | 1273 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 32.5581 | 87.5000 | 20.0000 | 45.0262 | 21 | 3 | 21 | 84 | 84 | 100.0000 | |
| gduggal-snapplat | INDEL | D6_15 | segdup | hetalt | 58.4071 | 42.8571 | 91.6667 | 93.2394 | 21 | 28 | 22 | 2 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 19.3103 | 11.2903 | 66.6667 | 90.9366 | 21 | 165 | 20 | 10 | 9 | 90.0000 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 68.5714 | 60.0000 | 80.0000 | 90.8425 | 21 | 14 | 20 | 5 | 4 | 80.0000 | |
| ghariani-varprowl | INDEL | I6_15 | map_l100_m0_e0 | * | 68.8525 | 63.6364 | 75.0000 | 92.5134 | 21 | 12 | 21 | 7 | 5 | 71.4286 | |
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9533 | 21 | 0 | 21 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | func_cds | het | 69.8061 | 87.5000 | 58.0645 | 43.6364 | 21 | 3 | 18 | 13 | 12 | 92.3077 | |
| gduggal-snapvard | INDEL | I6_15 | map_siren | hetalt | 0.0000 | 29.1667 | 0.0000 | 0.0000 | 21 | 51 | 0 | 0 | 0 | ||
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 60.8696 | 51.2195 | 75.0000 | 96.2617 | 21 | 20 | 21 | 7 | 2 | 28.5714 | |
| gduggal-snapfb | INDEL | D6_15 | map_l150_m2_e1 | homalt | 80.7692 | 72.4138 | 91.3043 | 91.7563 | 21 | 8 | 21 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 57.9710 | 51.2821 | 66.6667 | 62.5000 | 20 | 19 | 4 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 57.1429 | 46.5116 | 74.0741 | 65.8228 | 20 | 23 | 20 | 7 | 7 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l125_m0_e0 | het | 80.3709 | 68.9655 | 96.2963 | 85.1648 | 20 | 9 | 26 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l150_m2_e0 | homalt | 80.0000 | 71.4286 | 90.9091 | 92.0000 | 20 | 8 | 20 | 2 | 2 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_siren | hetalt | 34.1880 | 23.8095 | 60.6061 | 98.0287 | 20 | 64 | 20 | 13 | 7 | 53.8462 | |
| gduggal-snapplat | INDEL | D6_15 | map_l100_m0_e0 | het | 47.3684 | 33.3333 | 81.8182 | 96.8208 | 20 | 40 | 9 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D6_15 | map_l100_m1_e0 | homalt | 47.6190 | 31.2500 | 100.0000 | 93.2692 | 20 | 44 | 14 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l100_m2_e0 | homalt | 47.0588 | 30.7692 | 100.0000 | 93.5484 | 20 | 45 | 14 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l100_m2_e1 | homalt | 45.9770 | 29.8507 | 100.0000 | 93.6364 | 20 | 47 | 14 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I1_5 | segdup | hetalt | 56.4516 | 41.6667 | 87.5000 | 98.6644 | 20 | 28 | 21 | 3 | 1 | 33.3333 | |
| gduggal-snapplat | INDEL | I6_15 | map_siren | homalt | 34.4828 | 22.2222 | 76.9231 | 89.1667 | 20 | 70 | 20 | 6 | 2 | 33.3333 | |
| gduggal-snapplat | INDEL | I6_15 | segdup | hetalt | 61.5385 | 44.4444 | 100.0000 | 92.0949 | 20 | 25 | 20 | 0 | 0 | ||
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 40.4040 | 47.6190 | 35.0877 | 98.8711 | 20 | 22 | 20 | 37 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 34.7826 | 47.6190 | 27.3973 | 95.0441 | 20 | 22 | 20 | 53 | 3 | 5.6604 | |
| gduggal-snapvard | INDEL | * | map_l125_m1_e0 | hetalt | 0.0000 | 50.0000 | 0.0000 | 0.0000 | 20 | 20 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 8.2305 | 5.2083 | 19.6078 | 88.3429 | 20 | 364 | 20 | 82 | 46 | 56.0976 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 4.1479 | 2.2831 | 22.6415 | 66.0800 | 20 | 856 | 48 | 164 | 113 | 68.9024 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 0.0000 | 54.0541 | 0.0000 | 0.0000 | 20 | 17 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D16_PLUS | map_l100_m0_e0 | * | 70.1754 | 71.4286 | 68.9655 | 98.1611 | 20 | 8 | 20 | 9 | 2 | 22.2222 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 51.2821 | 0.0000 | 0.0000 | 20 | 19 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 51.7879 | 47.6190 | 56.7568 | 99.4738 | 20 | 22 | 21 | 16 | 13 | 81.2500 | |
| gduggal-snapvard | INDEL | I1_5 | map_l250_m0_e0 | * | 77.9468 | 83.3333 | 73.2143 | 97.7734 | 20 | 4 | 41 | 15 | 3 | 20.0000 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 12.0040 | 6.4309 | 90.0000 | 57.7465 | 20 | 291 | 27 | 3 | 3 | 100.0000 | |
| gduggal-snapvard | INDEL | I6_15 | map_l150_m2_e1 | * | 62.2963 | 74.0741 | 53.7500 | 88.5057 | 20 | 7 | 43 | 37 | 29 | 78.3784 | |
| gduggal-snapfb | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 3.0372 | 74.0741 | 1.5504 | 75.3723 | 20 | 7 | 20 | 1270 | 4 | 0.3150 | |
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 4.1580 | 76.9231 | 2.1368 | 79.9012 | 20 | 6 | 20 | 916 | 7 | 0.7642 | |
| ghariani-varprowl | INDEL | D6_15 | map_l150_m0_e0 | het | 86.9565 | 100.0000 | 76.9231 | 95.7096 | 20 | 0 | 20 | 6 | 6 | 100.0000 | |
| ghariani-varprowl | INDEL | D6_15 | map_l150_m1_e0 | homalt | 86.9565 | 76.9231 | 100.0000 | 85.2941 | 20 | 6 | 20 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | map_l250_m2_e0 | * | 90.9091 | 90.9091 | 90.9091 | 97.1166 | 20 | 2 | 20 | 2 | 1 | 50.0000 | |
| ghariani-varprowl | INDEL | D6_15 | map_l250_m2_e1 | * | 90.9091 | 90.9091 | 90.9091 | 97.1795 | 20 | 2 | 20 | 2 | 1 | 50.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 62.5000 | 54.0541 | 74.0741 | 77.3109 | 20 | 17 | 20 | 7 | 7 | 100.0000 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 0.4191 | 0.0000 | 0.0000 | 20 | 4752 | 0 | 0 | 0 | ||