PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
39451-39500 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | D16_PLUS | map_l125_m2_e0 | * | 56.7568 | 77.7778 | 44.6809 | 93.7831 | 21 | 6 | 21 | 26 | 3 | 11.5385 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l125_m2_e1 | * | 55.2632 | 75.0000 | 43.7500 | 93.7662 | 21 | 7 | 21 | 27 | 3 | 11.1111 | |
| mlin-fermikit | INDEL | D6_15 | map_l150_m1_e0 | het | 62.9857 | 53.8462 | 75.8621 | 84.2391 | 21 | 18 | 22 | 7 | 4 | 57.1429 | |
| mlin-fermikit | INDEL | D6_15 | map_l150_m2_e1 | homalt | 75.0000 | 72.4138 | 77.7778 | 88.7500 | 21 | 8 | 21 | 6 | 6 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 64.6154 | 47.7273 | 100.0000 | 86.2745 | 21 | 23 | 21 | 0 | 0 | ||
| mlin-fermikit | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 64.6154 | 47.7273 | 100.0000 | 87.8613 | 21 | 23 | 21 | 0 | 0 | ||
| mlin-fermikit | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 63.6364 | 46.6667 | 100.0000 | 88.2022 | 21 | 24 | 21 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 76.1120 | 87.5000 | 67.3469 | 73.6559 | 21 | 3 | 33 | 16 | 14 | 87.5000 | |
| qzeng-custom | SNP | ti | map_l100_m2_e0 | hetalt | 82.3529 | 70.0000 | 100.0000 | 88.3978 | 21 | 9 | 21 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 97.6744 | 100.0000 | 95.4545 | 99.9595 | 21 | 0 | 21 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 0.0000 | 70.0000 | 0.0000 | 0.0000 | 21 | 9 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 82.7455 | 87.5000 | 78.4810 | 39.4636 | 21 | 3 | 124 | 34 | 14 | 41.1765 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 79.3333 | 77.7778 | 80.9524 | 75.8621 | 21 | 6 | 17 | 4 | 4 | 100.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l250_m2_e1 | homalt | 62.0591 | 45.6522 | 96.8750 | 96.6562 | 21 | 25 | 31 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 95.4545 | 91.3043 | 100.0000 | 72.2222 | 21 | 2 | 20 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 82.3529 | 70.0000 | 100.0000 | 69.6970 | 21 | 9 | 20 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 22.2222 | 21 | 0 | 21 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 95.4545 | 91.3043 | 100.0000 | 37.1429 | 21 | 2 | 22 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l150_m1_e0 | * | 91.3043 | 84.0000 | 100.0000 | 91.3223 | 21 | 4 | 21 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l150_m2_e0 | * | 91.3043 | 84.0000 | 100.0000 | 92.5267 | 21 | 4 | 21 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l150_m1_e0 | * | 89.3617 | 84.0000 | 95.4545 | 90.9836 | 21 | 4 | 21 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | map_l150_m2_e0 | * | 89.3617 | 84.0000 | 95.4545 | 92.2261 | 21 | 4 | 21 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 81.0526 | 77.7778 | 84.6154 | 96.1310 | 21 | 6 | 22 | 4 | 1 | 25.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l125_m1_e0 | * | 82.3529 | 77.7778 | 87.5000 | 98.2621 | 21 | 6 | 21 | 3 | 2 | 66.6667 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l125_m2_e0 | * | 82.3529 | 77.7778 | 87.5000 | 98.3075 | 21 | 6 | 21 | 3 | 2 | 66.6667 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l125_m2_e1 | * | 80.7692 | 75.0000 | 87.5000 | 98.3146 | 21 | 7 | 21 | 3 | 2 | 66.6667 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.3862 | 0.0000 | 0.0000 | 21 | 5417 | 0 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 40.0000 | 21 | 0 | 21 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 89.3617 | 80.7692 | 100.0000 | 91.3934 | 21 | 5 | 21 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I1_5 | map_l250_m0_e0 | * | 89.3617 | 87.5000 | 91.3043 | 98.8990 | 21 | 3 | 21 | 2 | 1 | 50.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l150_m1_e0 | * | 85.7143 | 84.0000 | 87.5000 | 96.2675 | 21 | 4 | 21 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | I6_15 | map_l150_m2_e0 | * | 85.7143 | 84.0000 | 87.5000 | 96.7078 | 21 | 4 | 21 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | SNP | ti | map_l100_m1_e0 | hetalt | 82.3529 | 72.4138 | 95.4545 | 87.4286 | 21 | 8 | 21 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 97.6744 | 100.0000 | 95.4545 | 99.9618 | 21 | 0 | 21 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 89.3617 | 80.7692 | 100.0000 | 72.7273 | 21 | 5 | 18 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 89.3617 | 80.7692 | 100.0000 | 72.7273 | 21 | 5 | 18 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 25.0000 | 21 | 0 | 21 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_l250_m2_e0 | * | 97.6744 | 95.4545 | 100.0000 | 93.9058 | 21 | 1 | 22 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_l250_m2_e1 | * | 97.6744 | 95.4545 | 100.0000 | 94.0860 | 21 | 1 | 22 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | segdup | het | 93.3333 | 87.5000 | 100.0000 | 87.9781 | 21 | 3 | 22 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I6_15 | func_cds | het | 84.0000 | 87.5000 | 80.7692 | 33.3333 | 21 | 3 | 21 | 5 | 5 | 100.0000 | |
| jpowers-varprowl | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 82.3529 | 80.7692 | 84.0000 | 97.6258 | 21 | 5 | 21 | 4 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 91.3043 | 84.0000 | 100.0000 | 42.5000 | 21 | 4 | 23 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 34.3750 | 21 | 0 | 21 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 95.4545 | 95.4545 | 95.4545 | 87.6404 | 21 | 1 | 21 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 97.6744 | 95.4545 | 100.0000 | 79.6117 | 21 | 1 | 21 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 97.6744 | 95.4545 | 100.0000 | 81.8966 | 21 | 1 | 21 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 97.6744 | 95.4545 | 100.0000 | 82.5000 | 21 | 1 | 21 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 36.3636 | 21 | 0 | 21 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | map_siren | homalt | 97.6744 | 100.0000 | 95.4545 | 92.9487 | 21 | 0 | 21 | 1 | 0 | 0.0000 | |