PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
39051-39100 / 86044 show all | |||||||||||||||
| gduggal-snapfb | SNP | ti | map_l125_m2_e1 | hetalt | 93.8776 | 95.8333 | 92.0000 | 85.4651 | 23 | 1 | 23 | 2 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 48.6558 | 37.7049 | 68.5714 | 84.9138 | 23 | 38 | 24 | 11 | 10 | 90.9091 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 56.7901 | 56.0976 | 57.5000 | 80.9524 | 23 | 18 | 23 | 17 | 16 | 94.1176 | |
| ghariani-varprowl | INDEL | I1_5 | map_l250_m0_e0 | * | 90.1961 | 95.8333 | 85.1852 | 98.5842 | 23 | 1 | 23 | 4 | 1 | 25.0000 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.6523 | 0.0000 | 0.0000 | 23 | 3503 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 0.6523 | 0.0000 | 0.0000 | 23 | 3503 | 0 | 0 | 0 | ||
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 33.5766 | 54.7619 | 24.2105 | 97.0652 | 23 | 19 | 23 | 72 | 1 | 1.3889 | |
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 23.2323 | 22.7723 | 23.7113 | 98.6305 | 23 | 78 | 23 | 74 | 6 | 8.1081 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 36.7887 | 26.4368 | 60.4651 | 99.9570 | 23 | 64 | 52 | 34 | 23 | 67.6471 | |
| gduggal-snapfb | INDEL | D6_15 | func_cds | het | 83.8269 | 79.3103 | 88.8889 | 40.0000 | 23 | 6 | 24 | 3 | 3 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 32.0725 | 30.6667 | 33.6134 | 68.6842 | 23 | 52 | 40 | 79 | 44 | 55.6962 | |
| gduggal-snapplat | INDEL | D6_15 | map_l125_m1_e0 | het | 47.3921 | 35.9375 | 69.5652 | 94.6882 | 23 | 41 | 16 | 7 | 1 | 14.2857 | |
| gduggal-snapplat | INDEL | D6_15 | map_l150_m1_e0 | * | 45.0392 | 31.5068 | 78.9474 | 96.7298 | 23 | 50 | 15 | 4 | 1 | 25.0000 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 52.2378 | 37.7049 | 85.0000 | 51.2195 | 23 | 38 | 17 | 3 | 2 | 66.6667 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 41.3223 | 100.0000 | 26.0417 | 79.7040 | 23 | 0 | 25 | 71 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_siren | hetalt | 0.0000 | 74.1935 | 0.0000 | 0.0000 | 23 | 8 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | HG002compoundhet | homalt | 15.8393 | 95.8333 | 8.6331 | 43.0328 | 23 | 1 | 24 | 254 | 199 | 78.3465 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 90.4177 | 92.0000 | 88.8889 | 91.0596 | 23 | 2 | 24 | 3 | 2 | 66.6667 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 85.1852 | 100.0000 | 74.1935 | 86.0360 | 23 | 0 | 23 | 8 | 8 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | segdup | het | 95.9166 | 95.8333 | 96.0000 | 94.4196 | 23 | 1 | 24 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 75.4098 | 95.8333 | 62.1622 | 79.5580 | 23 | 1 | 23 | 14 | 14 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 52.8416 | 65.7143 | 44.1860 | 84.1912 | 23 | 12 | 19 | 24 | 24 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l100_m0_e0 | * | 88.3843 | 82.1429 | 95.6522 | 87.8307 | 23 | 5 | 22 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | HG002compoundhet | homalt | 84.6862 | 95.8333 | 75.8621 | 56.0606 | 23 | 1 | 22 | 7 | 7 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | map_l100_m0_e0 | homalt | 95.7427 | 95.8333 | 95.6522 | 81.8898 | 23 | 1 | 22 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 88.3843 | 82.1429 | 95.6522 | 53.0612 | 23 | 5 | 22 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 92.0000 | 85.1852 | 100.0000 | 72.8261 | 23 | 4 | 25 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 93.9574 | 92.0000 | 96.0000 | 57.6271 | 23 | 2 | 24 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | map_l150_m2_e1 | * | 92.0000 | 85.1852 | 100.0000 | 92.0962 | 23 | 4 | 23 | 0 | 0 | ||
| mlin-fermikit | INDEL | * | map_l250_m0_e0 | * | 40.7080 | 29.4872 | 65.7143 | 95.2381 | 23 | 55 | 23 | 12 | 7 | 58.3333 | |
| ltrigg-rtg2 | SNP | ti | map_l125_m1_e0 | hetalt | 95.6522 | 91.6667 | 100.0000 | 53.1915 | 22 | 2 | 22 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | ti | map_l125_m2_e0 | hetalt | 95.6522 | 91.6667 | 100.0000 | 62.7119 | 22 | 2 | 22 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | ti | map_l125_m2_e1 | hetalt | 95.6522 | 91.6667 | 100.0000 | 62.7119 | 22 | 2 | 22 | 0 | 0 | ||
| mlin-fermikit | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 63.7681 | 46.8085 | 100.0000 | 89.1089 | 22 | 25 | 22 | 0 | 0 | ||
| mlin-fermikit | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 62.8571 | 45.8333 | 100.0000 | 89.5928 | 22 | 26 | 23 | 0 | 0 | ||
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 53.6585 | 91.6667 | 37.9310 | 51.2605 | 22 | 2 | 22 | 36 | 36 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 91.8330 | 91.6667 | 92.0000 | 89.1775 | 22 | 2 | 23 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 86.2745 | 100.0000 | 75.8621 | 83.7079 | 22 | 0 | 22 | 7 | 7 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l250_m2_e0 | het | 49.4382 | 33.3333 | 95.6522 | 93.9314 | 22 | 44 | 22 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l250_m2_e1 | het | 49.4382 | 33.3333 | 95.6522 | 94.1176 | 22 | 44 | 22 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | I1_5 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 43.5897 | 22 | 0 | 22 | 0 | 0 | ||
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 74.6313 | 61.1111 | 95.8333 | 91.7241 | 22 | 14 | 23 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.7778 | 95.6522 | 100.0000 | 79.0476 | 22 | 1 | 22 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 64.7059 | 91.6667 | 50.0000 | 51.7241 | 22 | 2 | 28 | 28 | 28 | 100.0000 | |
| qzeng-custom | INDEL | D6_15 | map_l100_m0_e0 | homalt | 86.4629 | 91.6667 | 81.8182 | 85.2018 | 22 | 2 | 27 | 6 | 1 | 16.6667 | |
| qzeng-custom | INDEL | D6_15 | map_l125_m0_e0 | het | 78.9744 | 75.8621 | 82.3529 | 94.6875 | 22 | 7 | 42 | 9 | 1 | 11.1111 | |
| qzeng-custom | INDEL | D6_15 | map_l150_m1_e0 | homalt | 87.8327 | 84.6154 | 91.3043 | 89.7321 | 22 | 4 | 21 | 2 | 1 | 50.0000 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 64.5786 | 95.6522 | 48.7437 | 63.6197 | 22 | 1 | 97 | 102 | 88 | 86.2745 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 66.6667 | 100.0000 | 50.0000 | 60.4938 | 22 | 0 | 96 | 96 | 85 | 88.5417 | |
| qzeng-custom | INDEL | I16_PLUS | segdup | het | 85.8034 | 91.6667 | 80.6452 | 93.8370 | 22 | 2 | 25 | 6 | 0 | 0.0000 | |