PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
38951-39000 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 95.8333 | 95.8333 | 95.8333 | 71.7647 | 23 | 1 | 23 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l100_m0_e0 | homalt | 97.8723 | 95.8333 | 100.0000 | 88.3249 | 23 | 1 | 23 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 86.7925 | 100.0000 | 76.6667 | 85.4369 | 23 | 0 | 23 | 7 | 6 | 85.7143 | |
| raldana-dualsentieon | INDEL | I16_PLUS | map_l100_m1_e0 | * | 93.8776 | 88.4615 | 100.0000 | 92.5325 | 23 | 3 | 23 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | map_l100_m2_e0 | * | 92.0000 | 88.4615 | 95.8333 | 93.6000 | 23 | 3 | 23 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | map_l100_m2_e1 | * | 92.0000 | 88.4615 | 95.8333 | 93.6675 | 23 | 3 | 23 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 93.8776 | 92.0000 | 95.8333 | 53.8462 | 23 | 2 | 23 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | func_cds | het | 97.8723 | 95.8333 | 100.0000 | 37.8378 | 23 | 1 | 23 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 86.7925 | 95.8333 | 79.3103 | 78.0303 | 23 | 1 | 23 | 6 | 6 | 100.0000 | |
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 77.9661 | 85.1852 | 71.8750 | 97.8261 | 23 | 4 | 23 | 9 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 84.5638 | 23 | 0 | 23 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.6015 | 0.0000 | 0.0000 | 23 | 3801 | 0 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 70.6667 | 23 | 0 | 22 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 86.7925 | 76.6667 | 100.0000 | 71.4286 | 23 | 7 | 20 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l125_m1_e0 | * | 90.1158 | 85.1852 | 95.6522 | 89.5928 | 23 | 4 | 22 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l125_m2_e0 | * | 90.1158 | 85.1852 | 95.6522 | 90.6504 | 23 | 4 | 22 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l125_m2_e1 | * | 88.3843 | 82.1429 | 95.6522 | 90.7631 | 23 | 5 | 22 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l100_m0_e0 | homalt | 95.7427 | 95.8333 | 95.6522 | 86.4706 | 23 | 1 | 22 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 90.1961 | 82.1429 | 100.0000 | 54.1667 | 23 | 5 | 22 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l150_m2_e1 | * | 90.1961 | 85.1852 | 95.8333 | 91.8089 | 23 | 4 | 23 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l250_m0_e0 | homalt | 95.8333 | 92.0000 | 100.0000 | 95.5638 | 23 | 2 | 24 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 82.3077 | 23 | 0 | 23 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 95.8333 | 95.8333 | 95.8333 | 72.4138 | 23 | 1 | 23 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | D6_15 | map_l100_m0_e0 | homalt | 97.8723 | 95.8333 | 100.0000 | 88.6700 | 23 | 1 | 23 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 88.4615 | 92.0000 | 85.1852 | 91.0299 | 23 | 2 | 23 | 4 | 1 | 25.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 73.2743 | 85.1852 | 64.2857 | 85.4167 | 23 | 4 | 9 | 5 | 5 | 100.0000 | |
| jli-custom | INDEL | I6_15 | func_cds | het | 97.8723 | 95.8333 | 100.0000 | 39.4737 | 23 | 1 | 23 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 93.7037 | 95.8333 | 91.6667 | 77.1429 | 23 | 1 | 22 | 2 | 1 | 50.0000 | |
| jmaeng-gatk | INDEL | D6_15 | map_l100_m0_e0 | homalt | 97.8723 | 95.8333 | 100.0000 | 90.3361 | 23 | 1 | 23 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 86.7925 | 100.0000 | 76.6667 | 88.6792 | 23 | 0 | 23 | 7 | 6 | 85.7143 | |
| jmaeng-gatk | INDEL | I16_PLUS | segdup | het | 95.8333 | 95.8333 | 95.8333 | 97.2125 | 23 | 1 | 23 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l150_m2_e1 | * | 86.7925 | 85.1852 | 88.4615 | 96.5517 | 23 | 4 | 23 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 92.0000 | 85.1852 | 100.0000 | 97.9860 | 23 | 4 | 23 | 0 | 0 | ||
| jmaeng-gatk | SNP | ti | map_l100_m2_e1 | hetalt | 83.6364 | 74.1935 | 95.8333 | 87.8173 | 23 | 8 | 23 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.8723 | 100.0000 | 95.8333 | 84.8101 | 23 | 0 | 23 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 95.8333 | 92.0000 | 100.0000 | 44.4444 | 23 | 2 | 25 | 0 | 0 | ||
| astatham-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 93.7037 | 95.8333 | 91.6667 | 76.6990 | 23 | 1 | 22 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | D6_15 | map_l100_m0_e0 | homalt | 97.8723 | 95.8333 | 100.0000 | 90.3361 | 23 | 1 | 23 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 86.7925 | 100.0000 | 76.6667 | 88.7640 | 23 | 0 | 23 | 7 | 7 | 100.0000 | |
| astatham-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 93.8776 | 88.4615 | 100.0000 | 90.9449 | 23 | 3 | 23 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | map_l100_m1_e0 | * | 90.1961 | 88.4615 | 92.0000 | 95.7627 | 23 | 3 | 23 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I16_PLUS | map_l100_m2_e0 | * | 86.7925 | 88.4615 | 85.1852 | 96.0641 | 23 | 3 | 23 | 4 | 1 | 25.0000 | |
| astatham-gatk | INDEL | I16_PLUS | map_l100_m2_e1 | * | 86.7925 | 88.4615 | 85.1852 | 96.0813 | 23 | 3 | 23 | 4 | 1 | 25.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.8723 | 100.0000 | 95.8333 | 84.5161 | 23 | 0 | 23 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 93.7037 | 95.8333 | 91.6667 | 76.2376 | 23 | 1 | 22 | 2 | 1 | 50.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l100_m0_e0 | homalt | 97.8723 | 95.8333 | 100.0000 | 90.4564 | 23 | 1 | 23 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 88.4615 | 100.0000 | 79.3103 | 89.2593 | 23 | 0 | 23 | 6 | 6 | 100.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 93.8776 | 88.4615 | 100.0000 | 90.8367 | 23 | 3 | 23 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 93.8776 | 92.0000 | 95.8333 | 61.9048 | 23 | 2 | 23 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | SNP | ti | map_l125_m1_e0 | hetalt | 97.8723 | 95.8333 | 100.0000 | 64.0625 | 23 | 1 | 23 | 0 | 0 | ||