PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
3851-3900 / 86044 show all
mlin-fermikitSNP*map_l100_m2_e1homalt
74.4467
68.1285
82.0565
52.6294
1893788591893741413961
95.6532
gduggal-snapvardSNPtimap_l150_m1_e0*
92.4318
96.0278
89.0953
81.2252
18929783187512295187
8.1482
ckim-isaacSNPtisegdup*
98.3830
96.8521
99.9630
86.8421
189226151892273
42.8571
asubramanian-gatkSNPtisegdup*
98.1992
96.8521
99.5842
91.3917
1892261518920798
10.1266
gduggal-bwavardSNP*map_l150_m1_e0het
92.8051
97.9602
88.1654
84.8061
18922394186992510124
4.9402
jlack-gatkSNPtimap_l125_m2_e1het
95.3643
99.0674
91.9280
83.3869
18909178189051660140
8.4337
ckim-dragenSNPtimap_l125_m2_e1het
97.7431
99.0360
96.4836
78.3312
189031841890568965
9.4340
gduggal-bwavardSNP*map_l125_m0_e0*
93.5292
97.4826
89.8840
82.4074
1889748818668210198
4.6645
gduggal-snapfbSNPtimap_l150_m1_e0*
96.2042
95.8452
96.5660
76.1103
1889381918897672348
51.7857
rpoplin-dv42SNPtimap_l125_m2_e1het
99.1705
98.9679
99.3738
71.8144
188901971888611974
62.1849
ltrigg-rtg1SNP*map_l125_m0_e0*
98.5751
97.4258
99.7517
64.2305
18886499188844716
34.0426
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
63.3637
60.1216
66.9753
55.5677
18883125251989198087269
74.1130
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
63.3637
60.1216
66.9753
55.5677
18883125251989198087269
74.1130
raldana-dualsentieonSNPtimap_l125_m2_e1het
98.7395
98.9207
98.5590
73.8046
18881206188772763
1.0870
anovak-vgSNP*map_l100_m0_e0het
78.3081
89.0262
69.8934
77.2580
1887823271869380522114
26.2543
hfeng-pmm1SNPtimap_l125_m2_e1het
99.2454
98.8841
99.6094
71.5149
18874213188707418
24.3243
ghariani-varprowlSNPtimap_l125_m2_e1het
97.6784
98.8631
96.5217
79.2114
1887021718870680143
21.0294
anovak-vgINDELD1_5HG002complexvarhet
92.0015
90.8693
93.1622
52.9821
188691896195651436834
58.0780
jli-customSNPtimap_l125_m2_e1het
99.1383
98.8526
99.4256
70.6228
188682191886610933
30.2752
ndellapenna-hhgaSNP*map_l150_m1_e0het
98.6191
97.6082
99.6512
73.3059
18854462188546630
45.4545
egarrison-hhgaSNPtimap_l125_m2_e1het
99.2602
98.7583
99.7671
71.8965
18850237188504416
36.3636
gduggal-bwafbSNPtimap_l125_m2_e1het
98.6133
98.7321
98.4947
75.9784
188452421884528878
27.0833
gduggal-bwaplatSNPtimap_l125_m2_e1*
76.0359
61.5656
99.3981
86.9873
18820117491882711434
29.8246
ndellapenna-hhgaINDEL**hetalt
84.9841
74.5730
98.7738
62.9843
18820641718044224192
85.7143
gduggal-snapplatSNPtimap_l150_m2_e1*
93.1844
90.7639
95.7375
84.5444
18809191418822838476
56.8019
gduggal-snapplatSNP*map_l150_m2_e1het
92.7489
92.3145
93.1874
87.6725
187981565188221376752
54.6512
eyeh-varpipeSNPtimap_l125_m2_e0het
98.9240
99.5550
98.3009
76.7289
18792841839831815
4.7170
astatham-gatkSNPtimap_l100_m0_e0*
92.5350
86.2891
99.7557
72.1287
187862985187834624
52.1739
ndellapenna-hhgaINDEL*HG002compoundhethetalt
85.1313
74.5631
99.1899
56.3007
18775640518000147122
82.9932
ltrigg-rtg2SNP*map_l125_m0_e0*
98.2838
96.7501
99.8669
59.4717
1875563018753254
16.0000
ltrigg-rtg1SNP*map_l150_m1_e0het
98.3972
97.0957
99.7341
63.5971
1875556118755509
18.0000
bgallagher-sentieonSNPtimap_l125_m2_e0het
99.0858
99.3537
98.8194
75.6140
187541221875022433
14.7321
gduggal-bwaplatSNP*map_l125_m1_e0het
79.2823
66.0433
99.1598
88.7864
1875196411876515943
27.0440
hfeng-pmm3SNPtimap_l125_m2_e0het
99.4510
99.3325
99.5698
72.2770
1875012618746818
9.8765
dgrover-gatkSNPtimap_l125_m2_e0het
99.2165
99.3060
99.1273
77.0589
187451311874116534
20.6061
hfeng-pmm2SNPtimap_l125_m2_e0het
99.1742
99.2636
99.0849
75.4183
187371391873317314
8.0925
gduggal-bwafbSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
94.6420
95.6229
93.6811
78.6041
18722857187841267139
10.9708
gduggal-bwafbSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
94.6420
95.6229
93.6811
78.6041
18722857187841267139
10.9708
eyeh-varpipeINDELD6_15**
75.4633
71.7500
79.5820
47.2482
1872173711865847874643
96.9919
ckim-isaacSNP*map_l125_m2_e1het
77.3202
63.1579
99.6699
75.2966
1872010920187226210
16.1290
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
93.2644
90.8623
95.7970
33.1527
18714188218667819734
89.6215
cchapple-customSNP*map_l150_m1_e0het
95.6722
96.8731
94.5008
80.5876
18712604187311090239
21.9266
ndellapenna-hhgaSNPtimap_l125_m2_e1het
98.8822
98.0248
99.7547
70.7116
18710377187104620
43.4783
gduggal-snapfbSNP*map_l150_m1_e0het
95.7011
96.8575
94.5719
74.7840
18709607187121074507
47.2067
egarrison-hhgaINDEL**hetalt
84.7197
74.1293
98.8404
62.3270
18708652918156213191
89.6714
egarrison-hhgaINDEL*lowcmp_SimpleRepeat_quadTR_11to50*
94.5094
94.1647
94.8565
75.2918
187031159187741018858
84.2829
mlin-fermikitSNP*map_l100_m2_e0homalt
74.2855
67.9468
81.9285
52.5634
1870188221870141253945
95.6364
jlack-gatkSNPtimap_l125_m2_e0het
95.3314
99.0570
91.8760
83.3511
18698178186941653140
8.4695
ckim-dragenSNPtimap_l125_m2_e0het
97.7337
99.0305
96.4704
78.2642
186931831869568465
9.5029
gduggal-snapvardSNP*map_l150_m1_e0het
89.3113
96.7385
82.9433
83.9813
18686630184643797256
6.7422