PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3851-3900 / 86044 show all | |||||||||||||||
| mlin-fermikit | SNP | * | map_l100_m2_e1 | homalt | 74.4467 | 68.1285 | 82.0565 | 52.6294 | 18937 | 8859 | 18937 | 4141 | 3961 | 95.6532 | |
| gduggal-snapvard | SNP | ti | map_l150_m1_e0 | * | 92.4318 | 96.0278 | 89.0953 | 81.2252 | 18929 | 783 | 18751 | 2295 | 187 | 8.1482 | |
| ckim-isaac | SNP | ti | segdup | * | 98.3830 | 96.8521 | 99.9630 | 86.8421 | 18922 | 615 | 18922 | 7 | 3 | 42.8571 | |
| asubramanian-gatk | SNP | ti | segdup | * | 98.1992 | 96.8521 | 99.5842 | 91.3917 | 18922 | 615 | 18920 | 79 | 8 | 10.1266 | |
| gduggal-bwavard | SNP | * | map_l150_m1_e0 | het | 92.8051 | 97.9602 | 88.1654 | 84.8061 | 18922 | 394 | 18699 | 2510 | 124 | 4.9402 | |
| jlack-gatk | SNP | ti | map_l125_m2_e1 | het | 95.3643 | 99.0674 | 91.9280 | 83.3869 | 18909 | 178 | 18905 | 1660 | 140 | 8.4337 | |
| ckim-dragen | SNP | ti | map_l125_m2_e1 | het | 97.7431 | 99.0360 | 96.4836 | 78.3312 | 18903 | 184 | 18905 | 689 | 65 | 9.4340 | |
| gduggal-bwavard | SNP | * | map_l125_m0_e0 | * | 93.5292 | 97.4826 | 89.8840 | 82.4074 | 18897 | 488 | 18668 | 2101 | 98 | 4.6645 | |
| gduggal-snapfb | SNP | ti | map_l150_m1_e0 | * | 96.2042 | 95.8452 | 96.5660 | 76.1103 | 18893 | 819 | 18897 | 672 | 348 | 51.7857 | |
| rpoplin-dv42 | SNP | ti | map_l125_m2_e1 | het | 99.1705 | 98.9679 | 99.3738 | 71.8144 | 18890 | 197 | 18886 | 119 | 74 | 62.1849 | |
| ltrigg-rtg1 | SNP | * | map_l125_m0_e0 | * | 98.5751 | 97.4258 | 99.7517 | 64.2305 | 18886 | 499 | 18884 | 47 | 16 | 34.0426 | |
| anovak-vg | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 63.3637 | 60.1216 | 66.9753 | 55.5677 | 18883 | 12525 | 19891 | 9808 | 7269 | 74.1130 | |
| anovak-vg | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 63.3637 | 60.1216 | 66.9753 | 55.5677 | 18883 | 12525 | 19891 | 9808 | 7269 | 74.1130 | |
| raldana-dualsentieon | SNP | ti | map_l125_m2_e1 | het | 98.7395 | 98.9207 | 98.5590 | 73.8046 | 18881 | 206 | 18877 | 276 | 3 | 1.0870 | |
| anovak-vg | SNP | * | map_l100_m0_e0 | het | 78.3081 | 89.0262 | 69.8934 | 77.2580 | 18878 | 2327 | 18693 | 8052 | 2114 | 26.2543 | |
| hfeng-pmm1 | SNP | ti | map_l125_m2_e1 | het | 99.2454 | 98.8841 | 99.6094 | 71.5149 | 18874 | 213 | 18870 | 74 | 18 | 24.3243 | |
| ghariani-varprowl | SNP | ti | map_l125_m2_e1 | het | 97.6784 | 98.8631 | 96.5217 | 79.2114 | 18870 | 217 | 18870 | 680 | 143 | 21.0294 | |
| anovak-vg | INDEL | D1_5 | HG002complexvar | het | 92.0015 | 90.8693 | 93.1622 | 52.9821 | 18869 | 1896 | 19565 | 1436 | 834 | 58.0780 | |
| jli-custom | SNP | ti | map_l125_m2_e1 | het | 99.1383 | 98.8526 | 99.4256 | 70.6228 | 18868 | 219 | 18866 | 109 | 33 | 30.2752 | |
| ndellapenna-hhga | SNP | * | map_l150_m1_e0 | het | 98.6191 | 97.6082 | 99.6512 | 73.3059 | 18854 | 462 | 18854 | 66 | 30 | 45.4545 | |
| egarrison-hhga | SNP | ti | map_l125_m2_e1 | het | 99.2602 | 98.7583 | 99.7671 | 71.8965 | 18850 | 237 | 18850 | 44 | 16 | 36.3636 | |
| gduggal-bwafb | SNP | ti | map_l125_m2_e1 | het | 98.6133 | 98.7321 | 98.4947 | 75.9784 | 18845 | 242 | 18845 | 288 | 78 | 27.0833 | |
| gduggal-bwaplat | SNP | ti | map_l125_m2_e1 | * | 76.0359 | 61.5656 | 99.3981 | 86.9873 | 18820 | 11749 | 18827 | 114 | 34 | 29.8246 | |
| ndellapenna-hhga | INDEL | * | * | hetalt | 84.9841 | 74.5730 | 98.7738 | 62.9843 | 18820 | 6417 | 18044 | 224 | 192 | 85.7143 | |
| gduggal-snapplat | SNP | ti | map_l150_m2_e1 | * | 93.1844 | 90.7639 | 95.7375 | 84.5444 | 18809 | 1914 | 18822 | 838 | 476 | 56.8019 | |
| gduggal-snapplat | SNP | * | map_l150_m2_e1 | het | 92.7489 | 92.3145 | 93.1874 | 87.6725 | 18798 | 1565 | 18822 | 1376 | 752 | 54.6512 | |
| eyeh-varpipe | SNP | ti | map_l125_m2_e0 | het | 98.9240 | 99.5550 | 98.3009 | 76.7289 | 18792 | 84 | 18398 | 318 | 15 | 4.7170 | |
| astatham-gatk | SNP | ti | map_l100_m0_e0 | * | 92.5350 | 86.2891 | 99.7557 | 72.1287 | 18786 | 2985 | 18783 | 46 | 24 | 52.1739 | |
| ndellapenna-hhga | INDEL | * | HG002compoundhet | hetalt | 85.1313 | 74.5631 | 99.1899 | 56.3007 | 18775 | 6405 | 18000 | 147 | 122 | 82.9932 | |
| ltrigg-rtg2 | SNP | * | map_l125_m0_e0 | * | 98.2838 | 96.7501 | 99.8669 | 59.4717 | 18755 | 630 | 18753 | 25 | 4 | 16.0000 | |
| ltrigg-rtg1 | SNP | * | map_l150_m1_e0 | het | 98.3972 | 97.0957 | 99.7341 | 63.5971 | 18755 | 561 | 18755 | 50 | 9 | 18.0000 | |
| bgallagher-sentieon | SNP | ti | map_l125_m2_e0 | het | 99.0858 | 99.3537 | 98.8194 | 75.6140 | 18754 | 122 | 18750 | 224 | 33 | 14.7321 | |
| gduggal-bwaplat | SNP | * | map_l125_m1_e0 | het | 79.2823 | 66.0433 | 99.1598 | 88.7864 | 18751 | 9641 | 18765 | 159 | 43 | 27.0440 | |
| hfeng-pmm3 | SNP | ti | map_l125_m2_e0 | het | 99.4510 | 99.3325 | 99.5698 | 72.2770 | 18750 | 126 | 18746 | 81 | 8 | 9.8765 | |
| dgrover-gatk | SNP | ti | map_l125_m2_e0 | het | 99.2165 | 99.3060 | 99.1273 | 77.0589 | 18745 | 131 | 18741 | 165 | 34 | 20.6061 | |
| hfeng-pmm2 | SNP | ti | map_l125_m2_e0 | het | 99.1742 | 99.2636 | 99.0849 | 75.4183 | 18737 | 139 | 18733 | 173 | 14 | 8.0925 | |
| gduggal-bwafb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 94.6420 | 95.6229 | 93.6811 | 78.6041 | 18722 | 857 | 18784 | 1267 | 139 | 10.9708 | |
| gduggal-bwafb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 94.6420 | 95.6229 | 93.6811 | 78.6041 | 18722 | 857 | 18784 | 1267 | 139 | 10.9708 | |
| eyeh-varpipe | INDEL | D6_15 | * | * | 75.4633 | 71.7500 | 79.5820 | 47.2482 | 18721 | 7371 | 18658 | 4787 | 4643 | 96.9919 | |
| ckim-isaac | SNP | * | map_l125_m2_e1 | het | 77.3202 | 63.1579 | 99.6699 | 75.2966 | 18720 | 10920 | 18722 | 62 | 10 | 16.1290 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 93.2644 | 90.8623 | 95.7970 | 33.1527 | 18714 | 1882 | 18667 | 819 | 734 | 89.6215 | |
| cchapple-custom | SNP | * | map_l150_m1_e0 | het | 95.6722 | 96.8731 | 94.5008 | 80.5876 | 18712 | 604 | 18731 | 1090 | 239 | 21.9266 | |
| ndellapenna-hhga | SNP | ti | map_l125_m2_e1 | het | 98.8822 | 98.0248 | 99.7547 | 70.7116 | 18710 | 377 | 18710 | 46 | 20 | 43.4783 | |
| gduggal-snapfb | SNP | * | map_l150_m1_e0 | het | 95.7011 | 96.8575 | 94.5719 | 74.7840 | 18709 | 607 | 18712 | 1074 | 507 | 47.2067 | |
| egarrison-hhga | INDEL | * | * | hetalt | 84.7197 | 74.1293 | 98.8404 | 62.3270 | 18708 | 6529 | 18156 | 213 | 191 | 89.6714 | |
| egarrison-hhga | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 94.5094 | 94.1647 | 94.8565 | 75.2918 | 18703 | 1159 | 18774 | 1018 | 858 | 84.2829 | |
| mlin-fermikit | SNP | * | map_l100_m2_e0 | homalt | 74.2855 | 67.9468 | 81.9285 | 52.5634 | 18701 | 8822 | 18701 | 4125 | 3945 | 95.6364 | |
| jlack-gatk | SNP | ti | map_l125_m2_e0 | het | 95.3314 | 99.0570 | 91.8760 | 83.3511 | 18698 | 178 | 18694 | 1653 | 140 | 8.4695 | |
| ckim-dragen | SNP | ti | map_l125_m2_e0 | het | 97.7337 | 99.0305 | 96.4704 | 78.2642 | 18693 | 183 | 18695 | 684 | 65 | 9.5029 | |
| gduggal-snapvard | SNP | * | map_l150_m1_e0 | het | 89.3113 | 96.7385 | 82.9433 | 83.9813 | 18686 | 630 | 18464 | 3797 | 256 | 6.7422 | |