PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
38501-38550 / 86044 show all | |||||||||||||||
| dgrover-gatk | INDEL | D16_PLUS | map_l100_m0_e0 | * | 80.6452 | 89.2857 | 73.5294 | 96.2842 | 25 | 3 | 25 | 9 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 90.9091 | 83.3333 | 100.0000 | 78.7402 | 25 | 5 | 27 | 0 | 0 | ||
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 94.3396 | 100.0000 | 89.2857 | 92.7273 | 25 | 0 | 25 | 3 | 2 | 66.6667 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 96.1538 | 92.5926 | 100.0000 | 92.4528 | 25 | 2 | 20 | 0 | 0 | ||
| dgrover-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 82.8729 | 92.5926 | 75.0000 | 96.8504 | 25 | 2 | 3 | 1 | 0 | 0.0000 | |
| dgrover-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 96.1538 | 92.5926 | 100.0000 | 97.8411 | 25 | 2 | 25 | 0 | 0 | ||
| dgrover-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 98.0392 | 96.1538 | 100.0000 | 96.9512 | 25 | 1 | 25 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 75.3650 | 64.1026 | 91.4286 | 63.5417 | 25 | 14 | 32 | 3 | 3 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 86.2069 | 75.7576 | 100.0000 | 59.3220 | 25 | 8 | 24 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | map_l150_m1_e0 | homalt | 96.1538 | 96.1538 | 96.1538 | 88.2883 | 25 | 1 | 25 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | I6_15 | map_l125_m1_e0 | het | 90.9091 | 83.3333 | 100.0000 | 89.7119 | 25 | 5 | 25 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l125_m2_e0 | het | 90.9091 | 83.3333 | 100.0000 | 90.8088 | 25 | 5 | 25 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l125_m2_e1 | het | 90.9091 | 83.3333 | 100.0000 | 90.9747 | 25 | 5 | 25 | 0 | 0 | ||
| eyeh-varpipe | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 59.5745 | 50.0000 | 73.6842 | 74.3243 | 25 | 25 | 28 | 10 | 7 | 70.0000 | |
| eyeh-varpipe | INDEL | * | map_l125_m2_e0 | hetalt | 73.6278 | 59.5238 | 96.4912 | 93.6947 | 25 | 17 | 55 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | * | map_l125_m2_e1 | hetalt | 72.5594 | 58.1395 | 96.4912 | 93.8245 | 25 | 18 | 55 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | * | map_l250_m0_e0 | homalt | 98.1818 | 100.0000 | 96.4286 | 97.2305 | 25 | 0 | 54 | 2 | 2 | 100.0000 | |
| ckim-isaac | SNP | * | map_l100_m2_e1 | hetalt | 73.5294 | 58.1395 | 100.0000 | 76.6355 | 25 | 18 | 25 | 0 | 0 | ||
| ckim-isaac | SNP | tv | map_l100_m2_e1 | hetalt | 73.5294 | 58.1395 | 100.0000 | 76.6355 | 25 | 18 | 25 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 3.1888 | 0.0000 | 0.0000 | 25 | 759 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | func_cds | het | 84.7458 | 86.2069 | 83.3333 | 48.2759 | 25 | 4 | 25 | 5 | 1 | 20.0000 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 18.1984 | 12.1359 | 36.3636 | 91.4286 | 25 | 181 | 24 | 42 | 24 | 57.1429 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 56.5463 | 51.0204 | 63.4146 | 78.6458 | 25 | 24 | 26 | 15 | 14 | 93.3333 | |
| ciseli-custom | INDEL | I6_15 | map_siren | homalt | 35.9820 | 27.7778 | 51.0638 | 81.4961 | 25 | 65 | 24 | 23 | 20 | 86.9565 | |
| ckim-dragen | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 90.9091 | 83.3333 | 100.0000 | 76.9231 | 25 | 5 | 27 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | map_l125_m1_e0 | * | 86.2069 | 92.5926 | 80.6452 | 97.3436 | 25 | 2 | 25 | 6 | 1 | 16.6667 | |
| ckim-dragen | INDEL | D16_PLUS | map_l125_m2_e0 | * | 83.3333 | 92.5926 | 75.7576 | 97.6035 | 25 | 2 | 25 | 8 | 1 | 12.5000 | |
| ckim-dragen | INDEL | D16_PLUS | map_l125_m2_e1 | * | 80.6452 | 89.2857 | 73.5294 | 97.5887 | 25 | 3 | 25 | 9 | 2 | 22.2222 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.1538 | 100.0000 | 92.5926 | 92.0118 | 25 | 0 | 25 | 2 | 2 | 100.0000 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 96.1538 | 92.5926 | 100.0000 | 92.3077 | 25 | 2 | 20 | 0 | 0 | ||
| ckim-dragen | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 86.2069 | 96.1538 | 78.1250 | 95.6224 | 25 | 1 | 25 | 7 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 90.9091 | 83.3333 | 100.0000 | 76.7241 | 25 | 5 | 27 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | map_l150_m1_e0 | homalt | 98.0392 | 96.1538 | 100.0000 | 90.0398 | 25 | 1 | 25 | 0 | 0 | ||
| cchapple-custom | INDEL | * | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.3795 | 25 | 0 | 25 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 92.5926 | 100.0000 | 86.2069 | 89.1386 | 25 | 0 | 25 | 4 | 3 | 75.0000 | |
| cchapple-custom | INDEL | I16_PLUS | map_l100_m1_e0 | * | 91.1641 | 96.1538 | 86.6667 | 93.9880 | 25 | 1 | 26 | 4 | 1 | 25.0000 | |
| cchapple-custom | INDEL | I16_PLUS | map_l100_m2_e0 | * | 91.1641 | 96.1538 | 86.6667 | 94.7826 | 25 | 1 | 26 | 4 | 1 | 25.0000 | |
| cchapple-custom | INDEL | I16_PLUS | map_l100_m2_e1 | * | 91.1641 | 96.1538 | 86.6667 | 94.8718 | 25 | 1 | 26 | 4 | 1 | 25.0000 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.1538 | 100.0000 | 92.5926 | 92.7224 | 25 | 0 | 25 | 2 | 2 | 100.0000 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 96.1538 | 92.5926 | 100.0000 | 92.1875 | 25 | 2 | 20 | 0 | 0 | ||
| ckim-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 94.3396 | 89.2857 | 100.0000 | 58.4615 | 25 | 3 | 27 | 0 | 0 | ||
| ckim-gatk | INDEL | I6_15 | map_l150_m2_e1 | * | 92.5926 | 92.5926 | 92.5926 | 96.3215 | 25 | 2 | 25 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l125_m1_e0 | het | 88.3191 | 83.3333 | 93.9394 | 91.8919 | 25 | 5 | 31 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l125_m2_e0 | het | 88.3191 | 83.3333 | 93.9394 | 92.8726 | 25 | 5 | 31 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l125_m2_e1 | het | 88.3191 | 83.3333 | 93.9394 | 93.0672 | 25 | 5 | 31 | 2 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 70.7177 | 59.5238 | 87.0968 | 98.6964 | 25 | 17 | 27 | 4 | 3 | 75.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l150_m2_e0 | het | 64.3246 | 54.3478 | 78.7879 | 85.0679 | 25 | 21 | 26 | 7 | 4 | 57.1429 | |
| mlin-fermikit | INDEL | * | map_l125_m1_e0 | hetalt | 75.7576 | 62.5000 | 96.1538 | 87.0647 | 25 | 15 | 25 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 69.4444 | 56.8182 | 89.2857 | 94.6463 | 25 | 19 | 25 | 3 | 3 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l125_m1_e0 | * | 94.2655 | 92.5926 | 96.0000 | 88.3721 | 25 | 2 | 24 | 1 | 0 | 0.0000 | |