PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
3801-3850 / 86044 show all
hfeng-pmm1SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.8143
97.9008
99.7450
65.3085
1916841119168490
0.0000
raldana-dualsentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.5826
97.8702
99.3056
66.7018
19162417191621346
4.4776
raldana-dualsentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.5826
97.8702
99.3056
66.7018
19162417191621346
4.4776
hfeng-pmm2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.6105
97.8651
99.3674
66.4258
19161418191621220
0.0000
hfeng-pmm2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.6105
97.8651
99.3674
66.4258
19161418191621220
0.0000
ckim-vqsrSNPtisegdup*
98.8035
98.0652
99.5531
93.1259
1915937819157867
8.1395
hfeng-pmm3SNP*map_l150_m1_e0het
99.2744
99.1820
99.3670
75.4908
191581581915212213
10.6557
dgrover-gatkSNP*map_l150_m1_e0het
98.9459
99.1510
98.7416
80.1493
191521641914624449
20.0820
gduggal-bwaplatSNPtisegdup*
98.6403
98.0243
99.2642
93.3166
19151386191571429
6.3380
hfeng-pmm2SNP*map_l150_m1_e0het
98.9149
99.1251
98.7057
78.5477
191471691914125123
9.1634
raldana-dualsentieonSNP*map_l125_m0_e0*
98.7848
98.7671
98.8026
73.3692
19146239191432329
3.8793
ckim-dragenSNP*map_l125_m0_e0*
98.0759
98.7207
97.4394
76.5498
191372481914150356
11.1332
gduggal-bwafbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
94.7484
92.8627
96.7122
44.0182
19126147019885676622
92.0118
egarrison-hhgaSNP*map_l125_m0_e0*
99.2012
98.6588
99.7496
73.5088
19125260191254823
47.9167
anovak-vgSNPtisegdup*
97.8325
97.8809
97.7842
91.7442
1912341419020431163
37.8190
ckim-isaacSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
97.1734
94.6284
99.8591
48.1340
191141085191382718
66.6667
rpoplin-dv42SNP*map_l125_m0_e0*
98.7955
98.5969
98.9950
72.9367
1911327219110194120
61.8557
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
62.1592
62.6870
61.6403
53.4558
1910711373300861872313632
72.8088
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
62.1592
62.6870
61.6403
53.4558
1910711373300861872313632
72.8088
jlack-gatkSNP*map_l150_m1_e0het
93.5301
98.8559
88.7489
85.6678
19095221190892420175
7.2314
jpowers-varprowlSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
94.0567
97.5229
90.8285
81.7751
1909448519163193559
3.0491
jpowers-varprowlSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
94.0567
97.5229
90.8285
81.7751
1909448519163193559
3.0491
gduggal-bwavardSNPtisegdup*
98.4790
97.7325
99.2369
92.8031
190944431898714643
29.4521
jli-customSNP*map_l125_m0_e0*
98.9095
98.4885
99.3340
69.7637
190922931909212848
37.5000
rpoplin-dv42SNP*map_l150_m1_e0het
98.8884
98.7989
98.9780
74.2870
1908423219078197116
58.8832
anovak-vgINDELI1_5HG002complexvar*
58.0984
57.1891
59.0370
52.0780
1908014283193601343312541
93.3596
gduggal-bwafbSNP*map_l125_m0_e0*
98.4673
98.4266
98.5079
76.7395
190803051908028976
26.2976
ghariani-varprowlSNP*map_l150_m1_e0het
96.8491
98.7368
95.0321
81.8341
1907224419072997197
19.7593
hfeng-pmm1SNP*map_l150_m1_e0het
99.0880
98.7264
99.4522
74.8794
190702461906410527
25.7143
jlack-gatkSNP*map_l125_m0_e0*
94.5944
98.3647
91.1024
82.9942
19068317190651862148
7.9484
raldana-dualsentieonSNP*map_l150_m1_e0het
98.5115
98.6954
98.3283
76.6149
19064252190583243
0.9259
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.5342
97.3339
99.7644
69.1366
19057522190574514
31.1111
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.5342
97.3339
99.7644
69.1366
19057522190574514
31.1111
ckim-dragenSNP*map_l150_m1_e0het
97.4659
98.6591
96.3012
80.3004
190572591905873268
9.2896
mlin-fermikitSNPtisegdup*
98.0976
97.5329
98.6689
85.0585
190554821905125786
33.4630
gduggal-snapvardSNPtisegdup*
98.3714
97.5175
99.2403
92.6560
190524851894114546
31.7241
cchapple-customSNPtimap_l150_m1_e0*
96.7874
96.6213
96.9540
76.8102
1904666619034598159
26.5886
jpowers-varprowlSNPtimap_l150_m1_e0*
97.2860
96.5605
98.0225
78.7128
1903467819034384140
36.4583
egarrison-hhgaSNP*map_l150_m1_e0het
99.0911
98.4883
99.7013
74.4872
19024292190245722
38.5965
ghariani-varprowlSNP*map_l125_m0_e0*
97.0458
98.1171
95.9976
79.8507
1902036519020793172
21.6898
jli-customSNP*map_l150_m1_e0het
98.8306
98.4521
99.2121
72.9358
190172991901415148
31.7881
asubramanian-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.0736
97.1040
99.0627
73.0656
190125671902518021
11.6667
asubramanian-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.0736
97.1040
99.0627
73.0656
190125671902518021
11.6667
gduggal-bwafbSNP*map_l150_m1_e0het
98.1968
98.3951
97.9994
78.1832
190063101900638896
24.7423
eyeh-varpipeSNPtimap_l125_m2_e1het
98.9249
99.5547
98.3030
76.7768
19002851859532115
4.6729
ndellapenna-hhgaSNP*map_l125_m0_e0*
98.7976
97.9108
99.7006
72.0168
18980405189805729
50.8772
bgallagher-sentieonSNPtimap_l125_m2_e1het
99.0933
99.3608
98.8273
75.6520
189651221896122533
14.6667
hfeng-pmm3SNPtimap_l125_m2_e1het
99.4518
99.3346
99.5693
72.3168
1896012718956828
9.7561
dgrover-gatkSNPtimap_l125_m2_e1het
99.2226
99.3137
99.1317
77.0880
189561311895216634
20.4819
hfeng-pmm2SNPtimap_l125_m2_e1het
99.1807
99.2718
99.0899
75.4485
189481391894417414
8.0460