PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
38351-38400 / 86044 show all | |||||||||||||||
| qzeng-custom | INDEL | D1_5 | map_l250_m0_e0 | het | 85.7732 | 78.7879 | 94.1176 | 99.0950 | 26 | 7 | 32 | 2 | 2 | 100.0000 | |
| qzeng-custom | INDEL | D6_15 | func_cds | het | 85.5576 | 89.6552 | 81.8182 | 50.0000 | 26 | 3 | 27 | 6 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 66.6667 | 100.0000 | 26 | 13 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 88.1356 | 78.7879 | 100.0000 | 55.9322 | 26 | 7 | 26 | 0 | 0 | ||
| mlin-fermikit | INDEL | D6_15 | map_l125_m1_e0 | homalt | 78.7879 | 76.4706 | 81.2500 | 88.3636 | 26 | 8 | 26 | 6 | 6 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l150_m2_e1 | het | 65.2113 | 55.3191 | 79.4118 | 85.2174 | 26 | 21 | 27 | 7 | 4 | 57.1429 | |
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 61.1765 | 61.9048 | 60.4651 | 96.8101 | 26 | 16 | 26 | 17 | 10 | 58.8235 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l125_m1_e0 | * | 92.8571 | 96.2963 | 89.6552 | 94.5386 | 26 | 1 | 26 | 3 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l125_m2_e0 | * | 92.8571 | 96.2963 | 89.6552 | 95.3451 | 26 | 1 | 26 | 3 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l125_m2_e1 | * | 91.2281 | 92.8571 | 89.6552 | 95.4474 | 26 | 2 | 26 | 3 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_siren | hetalt | 91.2281 | 83.8710 | 100.0000 | 80.5556 | 26 | 5 | 28 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | map_l150_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 86.8687 | 26 | 0 | 26 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 96.2963 | 92.8571 | 100.0000 | 60.0000 | 26 | 2 | 28 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | map_l100_m0_e0 | * | 86.6667 | 78.7879 | 96.2963 | 88.4120 | 26 | 7 | 26 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l100_m0_e0 | * | 88.1356 | 92.8571 | 83.8710 | 97.1001 | 26 | 2 | 26 | 5 | 0 | 0.0000 | |
| ciseli-custom | SNP | * | map_l100_m1_e0 | hetalt | 71.2329 | 63.4146 | 81.2500 | 73.7705 | 26 | 15 | 26 | 6 | 5 | 83.3333 | |
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 48.4043 | 74.2857 | 35.8974 | 92.5643 | 26 | 9 | 28 | 50 | 16 | 32.0000 | |
| ciseli-custom | SNP | tv | map_l100_m1_e0 | hetalt | 71.2329 | 63.4146 | 81.2500 | 73.7705 | 26 | 15 | 26 | 6 | 5 | 83.3333 | |
| ckim-dragen | INDEL | D16_PLUS | map_siren | hetalt | 91.2281 | 83.8710 | 100.0000 | 82.6087 | 26 | 5 | 28 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | map_l150_m2_e0 | homalt | 96.2963 | 92.8571 | 100.0000 | 92.1687 | 26 | 2 | 26 | 0 | 0 | ||
| ckim-dragen | INDEL | I6_15 | map_l150_m2_e1 | * | 98.1132 | 96.2963 | 100.0000 | 95.5095 | 26 | 1 | 26 | 0 | 0 | ||
| ciseli-custom | INDEL | * | map_l250_m0_e0 | het | 51.9039 | 49.0566 | 55.1020 | 98.7937 | 26 | 27 | 27 | 22 | 5 | 22.7273 | |
| cchapple-custom | INDEL | D16_PLUS | map_l125_m1_e0 | * | 91.2281 | 96.2963 | 86.6667 | 94.5055 | 26 | 1 | 26 | 4 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l125_m2_e0 | * | 91.2281 | 96.2963 | 86.6667 | 95.1923 | 26 | 1 | 26 | 4 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l125_m2_e1 | * | 89.6552 | 92.8571 | 86.6667 | 95.3125 | 26 | 2 | 26 | 4 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D6_15 | map_l150_m2_e0 | homalt | 94.5455 | 92.8571 | 96.2963 | 86.2245 | 26 | 2 | 26 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 95.7643 | 96.2963 | 95.2381 | 82.0896 | 26 | 1 | 80 | 4 | 4 | 100.0000 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 92.8571 | 0.0000 | 0.0000 | 26 | 2 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 5.2953 | 0.0000 | 0.0000 | 26 | 465 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 25.2427 | 15.4762 | 68.4211 | 87.0748 | 26 | 142 | 26 | 12 | 8 | 66.6667 | |
| anovak-vg | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 35.1351 | 0.0000 | 0.0000 | 26 | 48 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 22.4849 | 18.3099 | 29.1262 | 29.9320 | 26 | 116 | 30 | 73 | 61 | 83.5616 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_siren | hetalt | 91.2281 | 83.8710 | 100.0000 | 84.0000 | 26 | 5 | 28 | 0 | 0 | ||
| anovak-vg | INDEL | I1_5 | func_cds | het | 53.0612 | 44.0678 | 66.6667 | 45.0704 | 26 | 33 | 26 | 13 | 3 | 23.0769 | |
| anovak-vg | INDEL | I1_5 | map_l250_m1_e0 | het | 47.9644 | 43.3333 | 53.7037 | 97.5785 | 26 | 34 | 29 | 25 | 3 | 12.0000 | |
| anovak-vg | INDEL | I6_15 | func_cds | * | 63.7892 | 60.4651 | 67.5000 | 37.5000 | 26 | 17 | 27 | 13 | 10 | 76.9231 | |
| anovak-vg | INDEL | I6_15 | map_l100_m1_e0 | homalt | 64.7111 | 78.7879 | 54.9020 | 77.9221 | 26 | 7 | 28 | 23 | 19 | 82.6087 | |
| anovak-vg | INDEL | I6_15 | map_l100_m2_e0 | homalt | 63.9719 | 78.7879 | 53.8462 | 79.8450 | 26 | 7 | 28 | 24 | 20 | 83.3333 | |
| anovak-vg | INDEL | I6_15 | map_l100_m2_e1 | homalt | 63.9719 | 78.7879 | 53.8462 | 80.2281 | 26 | 7 | 28 | 24 | 20 | 83.3333 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 96.2963 | 92.8571 | 100.0000 | 60.0000 | 26 | 2 | 28 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 96.2963 | 92.8571 | 100.0000 | 60.0000 | 26 | 2 | 28 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D16_PLUS | map_l100_m0_e0 | * | 82.5397 | 92.8571 | 74.2857 | 96.0362 | 26 | 2 | 26 | 9 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 90.9091 | 83.3333 | 100.0000 | 78.4000 | 25 | 5 | 27 | 0 | 0 | ||
| anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 19.5313 | 12.1359 | 50.0000 | 45.6954 | 25 | 181 | 41 | 41 | 38 | 92.6829 | |
| anovak-vg | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 73.8636 | 71.4286 | 76.4706 | 89.6024 | 25 | 10 | 26 | 8 | 5 | 62.5000 | |
| anovak-vg | INDEL | * | tech_badpromoters | homalt | 76.1124 | 75.7576 | 76.4706 | 47.6923 | 25 | 8 | 26 | 8 | 7 | 87.5000 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 49.6562 | 36.7647 | 76.4706 | 96.4620 | 25 | 43 | 26 | 8 | 7 | 87.5000 | |
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 52.0833 | 43.8596 | 64.1026 | 99.3572 | 25 | 32 | 25 | 14 | 11 | 78.5714 | |
| anovak-vg | INDEL | D6_15 | map_l150_m2_e1 | homalt | 89.2857 | 86.2069 | 92.5926 | 87.6147 | 25 | 4 | 25 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | map_siren | hetalt | 0.0000 | 25.2525 | 0.0000 | 0.0000 | 25 | 74 | 0 | 0 | 0 | ||