PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
38301-38350 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | INDEL | D6_15 | func_cds | het | 94.5455 | 89.6552 | 100.0000 | 62.8571 | 26 | 3 | 26 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D6_15 | func_cds | het | 89.8273 | 89.6552 | 90.0000 | 47.3684 | 26 | 3 | 27 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l125_m0_e0 | het | 93.2102 | 89.6552 | 97.0588 | 89.8204 | 26 | 3 | 33 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l150_m2_e0 | homalt | 94.5455 | 92.8571 | 96.2963 | 92.5000 | 26 | 2 | 26 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 73.2394 | 57.7778 | 100.0000 | 57.3770 | 26 | 19 | 26 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.2798 | 0.0000 | 0.0000 | 26 | 9265 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 0.2798 | 0.0000 | 0.0000 | 26 | 9265 | 0 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 37.5614 | 34.6667 | 40.9836 | 65.1429 | 26 | 49 | 25 | 36 | 31 | 86.1111 | |
| eyeh-varpipe | INDEL | D6_15 | func_cds | het | 89.6552 | 89.6552 | 89.6552 | 38.2979 | 26 | 3 | 26 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_siren | hetalt | 41.0050 | 26.2626 | 93.4783 | 86.5103 | 26 | 73 | 43 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_siren | * | 44.1848 | 30.2326 | 82.0513 | 68.0328 | 26 | 60 | 32 | 7 | 7 | 100.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l150_m0_e0 | homalt | 55.9140 | 38.8060 | 100.0000 | 96.0606 | 26 | 41 | 26 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l150_m2_e0 | homalt | 96.2963 | 92.8571 | 100.0000 | 90.2622 | 26 | 2 | 26 | 0 | 0 | ||
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 96.2963 | 92.8571 | 100.0000 | 60.0000 | 26 | 2 | 28 | 0 | 0 | ||
| ckim-isaac | INDEL | D1_5 | map_l250_m0_e0 | * | 71.2329 | 56.5217 | 96.2963 | 98.0519 | 26 | 20 | 26 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l125_m1_e0 | * | 92.8571 | 96.2963 | 89.6552 | 96.7885 | 26 | 1 | 26 | 3 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l125_m2_e0 | * | 91.2281 | 96.2963 | 86.6667 | 97.1936 | 26 | 1 | 26 | 4 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l125_m2_e1 | * | 89.6552 | 92.8571 | 86.6667 | 97.2653 | 26 | 2 | 26 | 4 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I6_15 | map_l100_m2_e0 | het | 59.0641 | 42.6230 | 96.1538 | 92.8177 | 26 | 35 | 25 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I6_15 | map_l100_m2_e1 | het | 59.0641 | 42.6230 | 96.1538 | 92.8767 | 26 | 35 | 25 | 1 | 1 | 100.0000 | |
| ckim-isaac | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 66.1640 | 61.9048 | 71.0526 | 87.6623 | 26 | 16 | 27 | 11 | 5 | 45.4545 | |
| egarrison-hhga | INDEL | D16_PLUS | map_siren | homalt | 85.2459 | 76.4706 | 96.2963 | 87.8378 | 26 | 8 | 26 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l100_m0_e0 | * | 89.6552 | 92.8571 | 86.6667 | 97.1910 | 26 | 2 | 26 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l100_m0_e0 | * | 86.6667 | 92.8571 | 81.2500 | 94.6932 | 26 | 2 | 26 | 6 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 96.2963 | 92.8571 | 100.0000 | 61.1111 | 26 | 2 | 28 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D16_PLUS | map_l100_m0_e0 | * | 85.2459 | 92.8571 | 78.7879 | 95.5041 | 26 | 2 | 26 | 7 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 96.2963 | 92.8571 | 100.0000 | 61.6438 | 26 | 2 | 28 | 0 | 0 | ||
| jlack-gatk | INDEL | D16_PLUS | map_siren | hetalt | 89.7657 | 83.8710 | 96.5517 | 80.4054 | 26 | 5 | 28 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l150_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 87.6777 | 26 | 0 | 26 | 0 | 0 | ||
| jlack-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 94.6684 | 92.8571 | 96.5517 | 57.3529 | 26 | 2 | 28 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l125_m1_e0 | het | 83.8710 | 86.6667 | 81.2500 | 93.6759 | 26 | 4 | 26 | 6 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l125_m2_e0 | het | 83.8710 | 86.6667 | 81.2500 | 94.3860 | 26 | 4 | 26 | 6 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l125_m2_e1 | het | 83.8710 | 86.6667 | 81.2500 | 94.5299 | 26 | 4 | 26 | 6 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 96.2963 | 92.8571 | 100.0000 | 60.5634 | 26 | 2 | 28 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | map_l100_m0_e0 | * | 86.6667 | 78.7879 | 96.2963 | 91.0000 | 26 | 7 | 26 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | map_l100_m0_e0 | * | 86.6667 | 78.7879 | 96.2963 | 91.1765 | 26 | 7 | 26 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l100_m0_e0 | * | 89.6552 | 92.8571 | 86.6667 | 95.1378 | 26 | 2 | 26 | 4 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l125_m1_e0 | * | 92.8571 | 96.2963 | 89.6552 | 95.1667 | 26 | 1 | 26 | 3 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l125_m2_e0 | * | 92.8571 | 96.2963 | 89.6552 | 95.8273 | 26 | 1 | 26 | 3 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l125_m2_e1 | * | 91.2281 | 92.8571 | 89.6552 | 95.9270 | 26 | 2 | 26 | 3 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 72.5100 | 61.9048 | 87.5000 | 94.9126 | 26 | 16 | 28 | 4 | 1 | 25.0000 | |
| mlin-fermikit | INDEL | * | map_l125_m2_e0 | hetalt | 75.3623 | 61.9048 | 96.2963 | 89.1566 | 26 | 16 | 26 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | * | map_l125_m2_e1 | hetalt | 74.2857 | 60.4651 | 96.2963 | 89.4531 | 26 | 17 | 26 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_siren | homalt | 59.7701 | 76.4706 | 49.0566 | 94.4906 | 26 | 8 | 26 | 27 | 6 | 22.2222 | |
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 85.2459 | 74.2857 | 100.0000 | 90.4762 | 26 | 9 | 26 | 0 | 0 | ||
| ndellapenna-hhga | SNP | ti | map_l100_m2_e0 | hetalt | 91.2281 | 86.6667 | 96.2963 | 79.0698 | 26 | 4 | 26 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l125_m1_e0 | * | 94.5455 | 96.2963 | 92.8571 | 91.5152 | 26 | 1 | 26 | 2 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l125_m2_e0 | * | 94.5455 | 96.2963 | 92.8571 | 92.3077 | 26 | 1 | 26 | 2 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l125_m2_e1 | * | 91.2281 | 92.8571 | 89.6552 | 92.1622 | 26 | 2 | 26 | 3 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_siren | homalt | 83.8710 | 76.4706 | 92.8571 | 87.8788 | 26 | 8 | 26 | 2 | 1 | 50.0000 | |