PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
38101-38150 / 86044 show all | |||||||||||||||
| egarrison-hhga | SNP | tv | map_l125_m1_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 78.2946 | 28 | 2 | 28 | 0 | 0 | ||
| egarrison-hhga | SNP | tv | map_l125_m2_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 81.3333 | 28 | 2 | 28 | 0 | 0 | ||
| egarrison-hhga | SNP | tv | map_l125_m2_e1 | hetalt | 96.5517 | 93.3333 | 100.0000 | 81.4570 | 28 | 2 | 28 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 50.4505 | 33.7349 | 100.0000 | 36.5385 | 28 | 55 | 33 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | map_l100_m0_e0 | hetalt | 91.8033 | 84.8485 | 100.0000 | 91.3690 | 28 | 5 | 29 | 0 | 0 | ||
| egarrison-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 72.7273 | 57.1429 | 100.0000 | 27.0270 | 28 | 21 | 27 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | func_cds | het | 98.2456 | 96.5517 | 100.0000 | 45.0980 | 28 | 1 | 28 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | map_l125_m0_e0 | het | 96.6628 | 96.5517 | 96.7742 | 92.3077 | 28 | 1 | 30 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l150_m0_e0 | * | 90.4232 | 87.5000 | 93.5484 | 93.6214 | 28 | 4 | 29 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l150_m2_e1 | homalt | 96.5517 | 96.5517 | 96.5517 | 88.6719 | 28 | 1 | 28 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | segdup | hetalt | 72.7273 | 57.1429 | 100.0000 | 90.1141 | 28 | 21 | 26 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l125_m0_e0 | het | 98.2456 | 96.5517 | 100.0000 | 94.8052 | 28 | 1 | 28 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | map_siren | hetalt | 94.9153 | 90.3226 | 100.0000 | 80.7692 | 28 | 3 | 30 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | map_l125_m0_e0 | het | 94.9153 | 96.5517 | 93.3333 | 95.7204 | 28 | 1 | 28 | 2 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D6_15 | map_l150_m2_e1 | homalt | 98.2456 | 96.5517 | 100.0000 | 90.0356 | 28 | 1 | 28 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | func_cds | het | 96.4901 | 96.5517 | 96.4286 | 42.8571 | 28 | 1 | 27 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 83.3906 | 75.6757 | 92.8571 | 77.4194 | 28 | 9 | 39 | 3 | 3 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l100_m1_e0 | homalt | 60.8696 | 43.7500 | 100.0000 | 72.0000 | 28 | 36 | 28 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | map_l150_m1_e0 | * | 54.9020 | 38.3562 | 96.5517 | 93.4389 | 28 | 45 | 28 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 64.3678 | 47.4576 | 100.0000 | 54.8387 | 28 | 31 | 28 | 0 | 0 | ||
| ckim-isaac | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 54.0000 | 38.0282 | 93.1034 | 47.2727 | 27 | 44 | 27 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 84.3750 | 77.1429 | 93.1034 | 76.8000 | 27 | 8 | 27 | 2 | 1 | 50.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 68.3544 | 57.4468 | 84.3750 | 66.6667 | 27 | 20 | 27 | 5 | 3 | 60.0000 | |
| egarrison-hhga | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 87.0968 | 77.1429 | 100.0000 | 90.2174 | 27 | 8 | 27 | 0 | 0 | ||
| egarrison-hhga | SNP | ti | map_l100_m1_e0 | hetalt | 94.7368 | 93.1034 | 96.4286 | 76.8595 | 27 | 2 | 27 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l125_m1_e0 | * | 96.4286 | 100.0000 | 93.1034 | 97.3098 | 27 | 0 | 27 | 2 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l125_m2_e0 | * | 96.4286 | 100.0000 | 93.1034 | 97.7147 | 27 | 0 | 27 | 2 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l125_m2_e1 | * | 94.7368 | 96.4286 | 93.1034 | 97.7658 | 27 | 1 | 27 | 2 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D6_15 | map_l150_m2_e0 | homalt | 98.1818 | 96.4286 | 100.0000 | 90.2527 | 27 | 1 | 27 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l125_m1_e0 | het | 93.1034 | 90.0000 | 96.4286 | 94.4773 | 27 | 3 | 27 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I6_15 | map_l125_m2_e0 | het | 93.1034 | 90.0000 | 96.4286 | 95.0877 | 27 | 3 | 27 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I6_15 | map_l125_m2_e1 | het | 93.1034 | 90.0000 | 96.4286 | 95.2055 | 27 | 3 | 27 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l150_m2_e0 | homalt | 96.4286 | 96.4286 | 96.4286 | 88.9328 | 27 | 1 | 27 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l150_m2_e1 | homalt | 96.4286 | 93.1034 | 100.0000 | 90.0369 | 27 | 2 | 27 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | map_l125_m1_e0 | het | 91.5254 | 90.0000 | 93.1034 | 92.3483 | 27 | 3 | 27 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_l125_m2_e0 | het | 91.5254 | 90.0000 | 93.1034 | 92.9952 | 27 | 3 | 27 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_l125_m2_e1 | het | 91.5254 | 90.0000 | 93.1034 | 93.1442 | 27 | 3 | 27 | 2 | 1 | 50.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_l125_m1_e0 | * | 93.1034 | 100.0000 | 87.0968 | 95.7182 | 27 | 0 | 27 | 4 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_l125_m2_e0 | * | 91.5254 | 100.0000 | 84.3750 | 96.1995 | 27 | 0 | 27 | 5 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_l125_m2_e1 | * | 90.0000 | 96.4286 | 84.3750 | 96.2963 | 27 | 1 | 27 | 5 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_siren | hetalt | 93.1034 | 87.0968 | 100.0000 | 82.9412 | 27 | 4 | 29 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 76.0563 | 64.2857 | 93.1034 | 99.3908 | 27 | 15 | 27 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | map_l150_m2_e0 | homalt | 98.1818 | 96.4286 | 100.0000 | 88.4120 | 27 | 1 | 27 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | map_l100_m0_e0 | * | 88.5246 | 81.8182 | 96.4286 | 91.9540 | 27 | 6 | 27 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 76.0563 | 64.2857 | 93.1034 | 91.2651 | 27 | 15 | 27 | 2 | 1 | 50.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_siren | hetalt | 93.1034 | 87.0968 | 100.0000 | 82.2086 | 27 | 4 | 29 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | map_l150_m2_e0 | homalt | 98.1818 | 96.4286 | 100.0000 | 87.6712 | 27 | 1 | 27 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D16_PLUS | map_l125_m1_e0 | * | 93.1034 | 100.0000 | 87.0968 | 94.5133 | 27 | 0 | 27 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l125_m2_e0 | * | 93.1034 | 100.0000 | 87.0968 | 95.2888 | 27 | 0 | 27 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l125_m2_e1 | * | 91.5254 | 96.4286 | 87.0968 | 95.4210 | 27 | 1 | 27 | 4 | 0 | 0.0000 | |