PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
37751-37800 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | INDEL | I6_15 | map_l100_m1_e0 | homalt | 95.2381 | 90.9091 | 100.0000 | 85.5072 | 30 | 3 | 30 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I6_15 | map_l100_m2_e0 | homalt | 95.2381 | 90.9091 | 100.0000 | 87.0130 | 30 | 3 | 30 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I6_15 | map_l100_m2_e1 | homalt | 95.2381 | 90.9091 | 100.0000 | 87.2881 | 30 | 3 | 30 | 0 | 0 | ||
| qzeng-custom | SNP | * | map_l100_m2_e1 | hetalt | 82.1918 | 69.7674 | 100.0000 | 88.8476 | 30 | 13 | 30 | 0 | 0 | ||
| qzeng-custom | SNP | tv | map_l100_m2_e1 | hetalt | 82.1918 | 69.7674 | 100.0000 | 88.8476 | 30 | 13 | 30 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | map_l100_m0_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 88.7273 | 30 | 3 | 31 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 80.0000 | 68.1818 | 96.7742 | 97.3884 | 30 | 14 | 30 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D1_5 | segdup | hetalt | 72.2591 | 57.6923 | 96.6667 | 96.9168 | 30 | 22 | 29 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 90.9953 | 85.7143 | 96.9697 | 69.4444 | 30 | 5 | 32 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | I6_15 | map_l100_m0_e0 | * | 95.2381 | 90.9091 | 100.0000 | 93.9024 | 30 | 3 | 30 | 0 | 0 | ||
| ckim-vqsr | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 92.3077 | 85.7143 | 100.0000 | 93.1350 | 30 | 5 | 30 | 0 | 0 | ||
| dgrover-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 92.3077 | 85.7143 | 100.0000 | 92.9245 | 30 | 5 | 30 | 0 | 0 | ||
| dgrover-gatk | SNP | ti | map_l100_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 70.5882 | 30 | 0 | 30 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 93.7973 | 90.9091 | 96.8750 | 61.9048 | 30 | 3 | 31 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D16_PLUS | map_siren | * | 32.6087 | 20.9790 | 73.1707 | 91.1638 | 30 | 113 | 30 | 11 | 6 | 54.5455 | |
| ckim-isaac | INDEL | D6_15 | map_l150_m2_e0 | * | 53.0973 | 36.5854 | 96.7742 | 93.8247 | 30 | 52 | 30 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 68.9655 | 73.1707 | 65.2174 | 70.5128 | 30 | 11 | 30 | 16 | 13 | 81.2500 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 77.9874 | 66.6667 | 93.9394 | 73.1707 | 30 | 15 | 31 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | I6_15 | map_l100_m1_e0 | homalt | 93.7500 | 90.9091 | 96.7742 | 84.7291 | 30 | 3 | 30 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | I6_15 | map_l100_m2_e0 | homalt | 93.7500 | 90.9091 | 96.7742 | 86.4035 | 30 | 3 | 30 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | I6_15 | map_l100_m2_e1 | homalt | 93.7500 | 90.9091 | 96.7742 | 86.6379 | 30 | 3 | 30 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 88.2353 | 83.3333 | 93.7500 | 86.7769 | 30 | 6 | 30 | 2 | 1 | 50.0000 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 3.0769 | 0.0000 | 0.0000 | 30 | 945 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 23.8908 | 17.7515 | 36.5217 | 59.5070 | 30 | 139 | 42 | 73 | 70 | 95.8904 | |
| ciseli-custom | INDEL | D1_5 | map_l250_m0_e0 | * | 66.2865 | 65.2174 | 67.3913 | 98.3922 | 30 | 16 | 31 | 15 | 3 | 20.0000 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 26.0012 | 16.8539 | 56.8627 | 86.1789 | 30 | 148 | 29 | 22 | 16 | 72.7273 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 49.1803 | 50.8475 | 47.6190 | 48.7805 | 30 | 29 | 30 | 33 | 26 | 78.7879 | |
| ckim-gatk | INDEL | I6_15 | map_l100_m0_e0 | * | 92.3077 | 90.9091 | 93.7500 | 93.5223 | 30 | 3 | 30 | 2 | 1 | 50.0000 | |
| ckim-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 92.3077 | 85.7143 | 100.0000 | 93.1350 | 30 | 5 | 30 | 0 | 0 | ||
| ckim-isaac | INDEL | * | map_l125_m1_e0 | hetalt | 83.1683 | 75.0000 | 93.3333 | 91.0448 | 30 | 10 | 28 | 2 | 2 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 93.7973 | 90.9091 | 96.8750 | 63.2184 | 30 | 3 | 31 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | HG002compoundhet | homalt | 12.7119 | 96.7742 | 6.8027 | 58.3176 | 30 | 1 | 30 | 411 | 411 | 100.0000 | |
| ckim-dragen | SNP | ti | map_l100_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 77.9412 | 30 | 0 | 30 | 0 | 0 | ||
| cchapple-custom | SNP | * | map_l125_m1_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 30 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | * | map_l125_m2_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 30 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | * | map_l125_m2_e1 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 30 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | ti | map_l100_m2_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 30 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | tv | map_l125_m1_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 30 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | tv | map_l125_m2_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 30 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | tv | map_l125_m2_e1 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 30 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | ti | map_l100_m1_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 29 | 0 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 5.4206 | 0.0000 | 0.0000 | 29 | 506 | 0 | 0 | 0 | ||
| ckim-gatk | SNP | * | map_l100_m2_e1 | hetalt | 79.4521 | 67.4419 | 96.6667 | 89.7959 | 29 | 14 | 29 | 1 | 1 | 100.0000 | |
| ckim-gatk | SNP | tv | map_l100_m2_e1 | hetalt | 79.4521 | 67.4419 | 96.6667 | 89.7959 | 29 | 14 | 29 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | * | map_l100_m0_e0 | hetalt | 0.0000 | 87.8788 | 0.0000 | 0.0000 | 29 | 4 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | map_l100_m1_e0 | * | 43.1655 | 33.3333 | 61.2245 | 89.3709 | 29 | 58 | 30 | 19 | 14 | 73.6842 | |
| ciseli-custom | INDEL | D6_15 | map_l125_m2_e1 | homalt | 62.4135 | 78.3784 | 51.8519 | 88.9117 | 29 | 8 | 28 | 26 | 24 | 92.3077 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 28.1655 | 19.4631 | 50.9434 | 80.0000 | 29 | 120 | 27 | 26 | 21 | 80.7692 | |
| ckim-dragen | SNP | * | map_l125_m1_e0 | hetalt | 98.3051 | 96.6667 | 100.0000 | 80.2721 | 29 | 1 | 29 | 0 | 0 | ||
| ckim-dragen | SNP | * | map_l125_m2_e0 | hetalt | 98.3051 | 96.6667 | 100.0000 | 83.0409 | 29 | 1 | 29 | 0 | 0 | ||