PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
37601-37650 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | INDEL | I6_15 | map_l100_m1_e0 | homalt | 96.8750 | 93.9394 | 100.0000 | 78.1022 | 31 | 2 | 30 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l100_m2_e0 | homalt | 96.8750 | 93.9394 | 100.0000 | 80.5195 | 31 | 2 | 30 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l100_m2_e1 | homalt | 96.8750 | 93.9394 | 100.0000 | 80.8917 | 31 | 2 | 30 | 0 | 0 | ||
| mlin-fermikit | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 59.0289 | 42.4658 | 96.7742 | 72.0721 | 31 | 42 | 30 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 29.5238 | 17.3184 | 100.0000 | 39.4737 | 31 | 148 | 46 | 0 | 0 | ||
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 43.8101 | 60.7843 | 34.2466 | 81.0390 | 31 | 20 | 25 | 48 | 46 | 95.8333 | |
| mlin-fermikit | INDEL | I6_15 | segdup | hetalt | 81.5789 | 68.8889 | 100.0000 | 87.8906 | 31 | 14 | 31 | 0 | 0 | ||
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 76.9887 | 88.5714 | 68.0851 | 93.5351 | 31 | 4 | 32 | 15 | 14 | 93.3333 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 82.6667 | 70.4545 | 100.0000 | 97.3368 | 31 | 13 | 31 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 96.8750 | 93.9394 | 100.0000 | 61.9048 | 31 | 2 | 32 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | map_l150_m0_e0 | * | 98.4127 | 96.8750 | 100.0000 | 92.4020 | 31 | 1 | 31 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | HG002compoundhet | homalt | 16.3588 | 100.0000 | 8.9080 | 58.9623 | 31 | 0 | 31 | 317 | 315 | 99.3691 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l100_m1_e0 | homalt | 93.9394 | 93.9394 | 93.9394 | 85.8974 | 31 | 2 | 31 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l100_m2_e0 | homalt | 93.9394 | 93.9394 | 93.9394 | 87.0588 | 31 | 2 | 31 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l100_m2_e1 | homalt | 93.9394 | 93.9394 | 93.9394 | 87.3563 | 31 | 2 | 31 | 2 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | HG002compoundhet | homalt | 48.8189 | 100.0000 | 32.2917 | 75.1295 | 31 | 0 | 31 | 65 | 65 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 91.1765 | 86.1111 | 96.8750 | 70.9091 | 31 | 5 | 31 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | SNP | ti | map_l100_m2_e1 | hetalt | 96.8750 | 100.0000 | 93.9394 | 83.9024 | 31 | 0 | 31 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | SNP | ti | map_l100_m2_e1 | hetalt | 98.4127 | 100.0000 | 96.8750 | 64.8352 | 31 | 0 | 31 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | map_l100_m0_e0 | hetalt | 93.9394 | 93.9394 | 93.9394 | 92.4485 | 31 | 2 | 31 | 2 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | map_siren | homalt | 93.9394 | 91.1765 | 96.8750 | 88.8889 | 31 | 3 | 31 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | ti | map_l100_m2_e0 | hetalt | 98.3607 | 100.0000 | 96.7742 | 65.1685 | 30 | 0 | 30 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | SNP | * | map_l125_m1_e0 | hetalt | 95.2381 | 100.0000 | 90.9091 | 84.5794 | 30 | 0 | 30 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | * | map_l125_m2_e0 | hetalt | 95.2381 | 100.0000 | 90.9091 | 86.5854 | 30 | 0 | 30 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | * | map_l125_m2_e1 | hetalt | 95.2381 | 100.0000 | 90.9091 | 86.6397 | 30 | 0 | 30 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | ti | map_l100_m2_e0 | hetalt | 96.7742 | 100.0000 | 93.7500 | 84.0796 | 30 | 0 | 30 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 92.3077 | 85.7143 | 100.0000 | 90.4959 | 30 | 5 | 23 | 0 | 0 | ||
| rpoplin-dv42 | SNP | tv | map_l125_m1_e0 | hetalt | 95.2381 | 100.0000 | 90.9091 | 84.5794 | 30 | 0 | 30 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | map_l125_m2_e0 | hetalt | 95.2381 | 100.0000 | 90.9091 | 86.5854 | 30 | 0 | 30 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | map_l125_m2_e1 | hetalt | 95.2381 | 100.0000 | 90.9091 | 86.6397 | 30 | 0 | 30 | 3 | 3 | 100.0000 | |
| jmaeng-gatk | SNP | tv | map_l100_m2_e1 | hetalt | 81.0811 | 69.7674 | 96.7742 | 90.1899 | 30 | 13 | 30 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | D1_5 | map_l250_m0_e0 | het | 89.5522 | 90.9091 | 88.2353 | 97.8358 | 30 | 3 | 30 | 4 | 2 | 50.0000 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 69.9301 | 58.8235 | 86.2069 | 92.6952 | 30 | 21 | 25 | 4 | 1 | 25.0000 | |
| jpowers-varprowl | INDEL | I6_15 | * | hetalt | 0.0000 | 0.3508 | 0.0000 | 0.0000 | 30 | 8521 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I6_15 | HG002compoundhet | hetalt | 0.0000 | 0.3514 | 0.0000 | 0.0000 | 30 | 8507 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 58.2524 | 50.8475 | 68.1818 | 80.3571 | 30 | 29 | 30 | 14 | 14 | 100.0000 | |
| jmaeng-gatk | SNP | * | map_l100_m2_e1 | hetalt | 81.0811 | 69.7674 | 96.7742 | 90.1899 | 30 | 13 | 30 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 83.5267 | 73.1707 | 97.2973 | 89.3372 | 30 | 11 | 36 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | SNP | * | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 63.4146 | 30 | 0 | 30 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 67.3913 | 30 | 0 | 30 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 67.3913 | 30 | 0 | 30 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | ti | map_l100_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.2921 | 30 | 0 | 30 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 63.4146 | 30 | 0 | 30 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 67.3913 | 30 | 0 | 30 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 67.3913 | 30 | 0 | 30 | 0 | 0 | ||
| jli-custom | SNP | * | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 74.1379 | 30 | 0 | 30 | 0 | 0 | ||
| jli-custom | SNP | * | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 78.4173 | 30 | 0 | 30 | 0 | 0 | ||
| jli-custom | SNP | * | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 78.4173 | 30 | 0 | 30 | 0 | 0 | ||
| jli-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 92.3077 | 85.7143 | 100.0000 | 92.8741 | 30 | 5 | 30 | 0 | 0 | ||
| jli-custom | SNP | ti | map_l100_m2_e0 | hetalt | 98.3607 | 100.0000 | 96.7742 | 72.8070 | 30 | 0 | 30 | 1 | 1 | 100.0000 | |