PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3701-3750 / 86044 show all | |||||||||||||||
| jli-custom | SNP | ti | segdup | * | 99.6094 | 99.8669 | 99.3533 | 88.6519 | 19511 | 26 | 19511 | 127 | 6 | 4.7244 | |
| bgallagher-sentieon | SNP | ti | segdup | * | 99.5103 | 99.8567 | 99.1663 | 89.5899 | 19509 | 28 | 19507 | 164 | 6 | 3.6585 | |
| raldana-dualsentieon | SNP | ti | map_l150_m1_e0 | * | 98.9223 | 98.9600 | 98.8846 | 73.7335 | 19507 | 205 | 19503 | 220 | 8 | 3.6364 | |
| dgrover-gatk | SNP | ti | segdup | * | 99.6780 | 99.8413 | 99.5153 | 89.9275 | 19506 | 31 | 19504 | 95 | 6 | 6.3158 | |
| egarrison-hhga | SNP | ti | map_l150_m1_e0 | * | 99.3657 | 98.9448 | 99.7902 | 73.6441 | 19504 | 208 | 19504 | 41 | 20 | 48.7805 | |
| hfeng-pmm3 | SNP | ti | segdup | * | 99.7137 | 99.8311 | 99.5965 | 88.9183 | 19504 | 33 | 19502 | 79 | 3 | 3.7975 | |
| cchapple-custom | SNP | ti | segdup | * | 99.6040 | 99.8311 | 99.3779 | 91.2552 | 19504 | 33 | 19490 | 122 | 16 | 13.1148 | |
| jli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 99.2014 | 99.6118 | 98.7944 | 67.9415 | 19503 | 76 | 19503 | 238 | 15 | 6.3025 | |
| jli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 99.2014 | 99.6118 | 98.7944 | 67.9415 | 19503 | 76 | 19503 | 238 | 15 | 6.3025 | |
| hfeng-pmm2 | SNP | ti | segdup | * | 99.6754 | 99.8157 | 99.5355 | 89.6871 | 19501 | 36 | 19499 | 91 | 9 | 9.8901 | |
| jlack-gatk | SNP | ti | segdup | * | 98.4574 | 99.8106 | 97.1403 | 92.8551 | 19500 | 37 | 19498 | 574 | 10 | 1.7422 | |
| ckim-dragen | SNP | ti | segdup | * | 98.5623 | 99.8106 | 97.3449 | 91.6401 | 19500 | 37 | 19505 | 532 | 9 | 1.6917 | |
| raldana-dualsentieon | SNP | ti | segdup | * | 99.6041 | 99.8055 | 99.4035 | 89.2386 | 19499 | 38 | 19497 | 117 | 4 | 3.4188 | |
| hfeng-pmm1 | SNP | ti | segdup | * | 99.7442 | 99.8004 | 99.6881 | 88.7407 | 19498 | 39 | 19496 | 61 | 5 | 8.1967 | |
| rpoplin-dv42 | SNP | ti | segdup | * | 99.7773 | 99.7799 | 99.7748 | 89.3733 | 19494 | 43 | 19492 | 44 | 19 | 43.1818 | |
| rpoplin-dv42 | SNP | ti | map_l150_m1_e0 | * | 99.1152 | 98.8890 | 99.3424 | 73.3921 | 19493 | 219 | 19489 | 129 | 91 | 70.5426 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.8166 | 98.1371 | 99.5056 | 55.0392 | 19492 | 370 | 19523 | 97 | 32 | 32.9897 | |
| jli-custom | SNP | ti | map_l150_m1_e0 | * | 99.2008 | 98.8636 | 99.5403 | 71.1664 | 19488 | 224 | 19486 | 90 | 35 | 38.8889 | |
| ckim-dragen | SNP | ti | map_l150_m1_e0 | * | 98.2015 | 98.8636 | 97.5482 | 76.3868 | 19488 | 224 | 19495 | 490 | 66 | 13.4694 | |
| gduggal-snapvard | SNP | * | map_l150_m2_e0 | het | 89.6113 | 96.7913 | 83.4229 | 84.9670 | 19487 | 646 | 19254 | 3826 | 259 | 6.7695 | |
| rpoplin-dv42 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 99.5554 | 99.5199 | 99.5910 | 69.5435 | 19485 | 94 | 19481 | 80 | 32 | 40.0000 | |
| rpoplin-dv42 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 99.5554 | 99.5199 | 99.5910 | 69.5435 | 19485 | 94 | 19481 | 80 | 32 | 40.0000 | |
| jmaeng-gatk | SNP | * | map_l100_m1_e0 | homalt | 83.8037 | 72.1438 | 99.9590 | 65.3578 | 19481 | 7522 | 19481 | 8 | 8 | 100.0000 | |
| egarrison-hhga | SNP | ti | segdup | * | 99.6343 | 99.7134 | 99.5554 | 88.9440 | 19481 | 56 | 19481 | 87 | 25 | 28.7356 | |
| ltrigg-rtg2 | SNP | ti | segdup | * | 99.2028 | 99.6980 | 98.7126 | 86.7471 | 19478 | 59 | 19475 | 254 | 32 | 12.5984 | |
| bgallagher-sentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 99.0767 | 99.4790 | 98.6777 | 68.4621 | 19477 | 102 | 19477 | 261 | 12 | 4.5977 | |
| bgallagher-sentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 99.0767 | 99.4790 | 98.6777 | 68.4621 | 19477 | 102 | 19477 | 261 | 12 | 4.5977 | |
| ghariani-varprowl | SNP | ti | segdup | * | 98.2251 | 99.6929 | 96.7998 | 91.5895 | 19477 | 60 | 19480 | 644 | 38 | 5.9006 | |
| ltrigg-rtg1 | SNP | ti | segdup | * | 99.1266 | 99.6417 | 98.6169 | 87.5468 | 19467 | 70 | 19465 | 273 | 31 | 11.3553 | |
| dgrover-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 99.2708 | 99.4280 | 99.1141 | 69.5332 | 19467 | 112 | 19467 | 174 | 16 | 9.1954 | |
| dgrover-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 99.2708 | 99.4280 | 99.1141 | 69.5332 | 19467 | 112 | 19467 | 174 | 16 | 9.1954 | |
| ndellapenna-hhga | SNP | ti | segdup | * | 99.5651 | 99.6059 | 99.5244 | 88.6856 | 19460 | 77 | 19460 | 93 | 33 | 35.4839 | |
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 93.2309 | 99.3718 | 87.8049 | 80.7052 | 19456 | 123 | 18720 | 2600 | 87 | 3.3462 | |
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 93.2309 | 99.3718 | 87.8049 | 80.7052 | 19456 | 123 | 18720 | 2600 | 87 | 3.3462 | |
| jlack-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.2940 | 99.3207 | 97.2884 | 75.8975 | 19446 | 133 | 19446 | 542 | 30 | 5.5351 | |
| jlack-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.2940 | 99.3207 | 97.2884 | 75.8975 | 19446 | 133 | 19446 | 542 | 30 | 5.5351 | |
| jlack-gatk | SNP | ti | map_l150_m1_e0 | * | 96.1043 | 98.6353 | 93.7000 | 82.0564 | 19443 | 269 | 19439 | 1307 | 125 | 9.5639 | |
| gduggal-snapfb | SNP | ti | segdup | * | 99.1459 | 99.5137 | 98.7809 | 90.9477 | 19442 | 95 | 19446 | 240 | 23 | 9.5833 | |
| gduggal-bwafb | SNP | ti | segdup | * | 99.0195 | 99.5086 | 98.5352 | 91.2837 | 19441 | 96 | 19441 | 289 | 16 | 5.5363 | |
| ckim-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.9363 | 99.2849 | 98.5900 | 75.9853 | 19439 | 140 | 19439 | 278 | 23 | 8.2734 | |
| ckim-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.9363 | 99.2849 | 98.5900 | 75.9853 | 19439 | 140 | 19439 | 278 | 23 | 8.2734 | |
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 54.3999 | 51.2849 | 57.9178 | 44.7526 | 19438 | 18464 | 33023 | 23994 | 20921 | 87.1926 | |
| ckim-vqsr | SNP | * | map_l125_m1_e0 | het | 80.8165 | 68.4629 | 98.6098 | 88.4760 | 19438 | 8954 | 19435 | 274 | 3 | 1.0949 | |
| ltrigg-rtg2 | SNP | * | map_l150_m2_e0 | het | 98.1544 | 96.5480 | 99.8151 | 61.4966 | 19438 | 695 | 19439 | 36 | 2 | 5.5556 | |
| cchapple-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.7584 | 99.2747 | 98.2475 | 76.8599 | 19437 | 142 | 19509 | 348 | 40 | 11.4943 | |
| cchapple-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.7584 | 99.2747 | 98.2475 | 76.8599 | 19437 | 142 | 19509 | 348 | 40 | 11.4943 | |
| gduggal-bwafb | SNP | ti | map_l150_m1_e0 | * | 98.7276 | 98.5998 | 98.8556 | 76.3349 | 19436 | 276 | 19436 | 225 | 69 | 30.6667 | |
| ckim-gatk | SNP | * | map_l100_m1_e0 | homalt | 83.6574 | 71.9327 | 99.9485 | 66.2938 | 19424 | 7579 | 19424 | 10 | 7 | 70.0000 | |
| ckim-dragen | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.6551 | 99.1981 | 98.1180 | 73.7453 | 19422 | 157 | 19551 | 375 | 40 | 10.6667 | |
| ckim-dragen | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.6551 | 99.1981 | 98.1180 | 73.7453 | 19422 | 157 | 19551 | 375 | 40 | 10.6667 | |