PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
37351-37400 / 86044 show all | |||||||||||||||
| jli-custom | INDEL | D6_15 | map_l150_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 93.3194 | 32 | 0 | 32 | 0 | 0 | ||
| jli-custom | SNP | tv | tech_badpromoters | het | 98.4615 | 96.9697 | 100.0000 | 54.9296 | 32 | 1 | 32 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 62.0650 | 56.1404 | 69.3878 | 99.4106 | 32 | 25 | 34 | 15 | 8 | 53.3333 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 72.7273 | 71.1111 | 74.4186 | 75.2874 | 32 | 13 | 32 | 11 | 11 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_siren | het | 61.5385 | 65.3061 | 58.1818 | 76.2931 | 32 | 17 | 32 | 23 | 23 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | segdup | * | 76.3282 | 68.0851 | 86.8421 | 91.3832 | 32 | 15 | 33 | 5 | 5 | 100.0000 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 19.8805 | 11.8959 | 60.4651 | 91.9021 | 32 | 237 | 26 | 17 | 11 | 64.7059 | |
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 80.3959 | 91.4286 | 71.7391 | 94.3489 | 32 | 3 | 33 | 13 | 4 | 30.7692 | |
| jpowers-varprowl | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 84.4800 | 88.8889 | 80.4878 | 90.5747 | 32 | 4 | 33 | 8 | 0 | 0.0000 | |
| jpowers-varprowl | SNP | tv | tech_badpromoters | het | 88.8889 | 96.9697 | 82.0513 | 68.2927 | 32 | 1 | 32 | 7 | 1 | 14.2857 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 59.1341 | 47.0588 | 79.5455 | 96.0644 | 32 | 36 | 35 | 9 | 9 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m1_e0 | het | 75.4825 | 69.5652 | 82.5000 | 81.5668 | 32 | 14 | 33 | 7 | 7 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m2_e0 | het | 73.7430 | 66.6667 | 82.5000 | 83.6735 | 32 | 16 | 33 | 7 | 7 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 69.3912 | 74.4186 | 65.0000 | 63.6364 | 32 | 11 | 39 | 21 | 20 | 95.2381 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 81.1268 | 69.5652 | 97.2973 | 43.0769 | 32 | 14 | 36 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l100_m2_e1 | het | 74.7082 | 62.7451 | 92.3077 | 81.8605 | 32 | 19 | 36 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 79.4045 | 68.0851 | 95.2381 | 93.5385 | 32 | 15 | 20 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l125_m1_e0 | homalt | 95.5224 | 94.1176 | 96.9697 | 91.7085 | 32 | 2 | 32 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 86.4865 | 91.4286 | 82.0513 | 92.3228 | 32 | 3 | 32 | 7 | 6 | 85.7143 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 71.8580 | 58.1818 | 93.9394 | 76.9231 | 32 | 23 | 31 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | SNP | tv | tech_badpromoters | homalt | 90.1408 | 82.0513 | 100.0000 | 58.4416 | 32 | 7 | 32 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.2882 | 0.0000 | 0.0000 | 32 | 11073 | 0 | 0 | 0 | ||
| egarrison-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 92.7536 | 86.4865 | 100.0000 | 86.9748 | 32 | 5 | 31 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 81.0127 | 76.1905 | 86.4865 | 99.3583 | 32 | 10 | 32 | 5 | 2 | 40.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 77.8589 | 68.0851 | 90.9091 | 88.5813 | 32 | 15 | 30 | 3 | 3 | 100.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 77.0186 | 66.6667 | 91.1765 | 89.5706 | 32 | 16 | 31 | 3 | 3 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 83.1169 | 74.4186 | 94.1176 | 57.5000 | 32 | 11 | 32 | 2 | 1 | 50.0000 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 56.9192 | 62.7451 | 52.0833 | 91.3514 | 32 | 19 | 25 | 23 | 2 | 8.6957 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 92.7536 | 88.8889 | 96.9697 | 47.6190 | 32 | 4 | 32 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l125_m1_e0 | homalt | 96.9697 | 94.1176 | 100.0000 | 89.5765 | 32 | 2 | 32 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.5224 | 91.4286 | 100.0000 | 91.4966 | 32 | 3 | 25 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | map_l100_m1_e0 | homalt | 98.4615 | 96.9697 | 100.0000 | 88.9655 | 32 | 1 | 32 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | map_l100_m2_e0 | homalt | 98.4615 | 96.9697 | 100.0000 | 89.9687 | 32 | 1 | 32 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | map_l100_m2_e1 | homalt | 98.4615 | 96.9697 | 100.0000 | 90.2439 | 32 | 1 | 32 | 0 | 0 | ||
| dgrover-gatk | SNP | tv | tech_badpromoters | het | 98.4615 | 96.9697 | 100.0000 | 56.1644 | 32 | 1 | 32 | 0 | 0 | ||
| egarrison-hhga | INDEL | * | map_l125_m1_e0 | hetalt | 88.8889 | 80.0000 | 100.0000 | 93.5841 | 32 | 8 | 29 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | tech_badpromoters | het | 98.4615 | 96.9697 | 100.0000 | 54.9296 | 32 | 1 | 32 | 0 | 0 | ||
| eyeh-varpipe | INDEL | * | tech_badpromoters | homalt | 94.2436 | 96.9697 | 91.6667 | 50.6849 | 32 | 1 | 33 | 3 | 3 | 100.0000 | |
| ckim-vqsr | INDEL | D6_15 | map_l150_m0_e0 | * | 96.9697 | 100.0000 | 94.1176 | 95.6242 | 32 | 0 | 32 | 2 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.5224 | 91.4286 | 100.0000 | 91.2281 | 32 | 3 | 25 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l100_m1_e0 | homalt | 98.4615 | 96.9697 | 100.0000 | 89.0411 | 32 | 1 | 32 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l100_m2_e0 | homalt | 98.4615 | 96.9697 | 100.0000 | 90.0312 | 32 | 1 | 32 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l100_m2_e1 | homalt | 98.4615 | 96.9697 | 100.0000 | 90.2141 | 32 | 1 | 32 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_l100_m1_e0 | homalt | 98.4615 | 96.9697 | 100.0000 | 85.9649 | 32 | 1 | 32 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_l100_m2_e0 | homalt | 98.4615 | 96.9697 | 100.0000 | 87.5486 | 32 | 1 | 32 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_l100_m2_e1 | homalt | 98.4615 | 96.9697 | 100.0000 | 87.8788 | 32 | 1 | 32 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | tech_badpromoters | het | 98.4615 | 96.9697 | 100.0000 | 40.7407 | 32 | 1 | 32 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D16_PLUS | map_siren | homalt | 91.4286 | 94.1176 | 88.8889 | 91.7051 | 32 | 2 | 32 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 98.4615 | 96.9697 | 100.0000 | 62.9213 | 32 | 1 | 33 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_l150_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 92.0000 | 32 | 0 | 32 | 0 | 0 | ||