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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 740 741 742 743 744 745 746 747 748 ... 1720 1721 » 37151-37200 / 86044 show all
gduggal-snapvard	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_51to200	het	42.2961	66.6667	30.9735	85.3532	34	17	70	156	39	25.0000
gduggal-snapvard	INDEL	I6_15	map_l125_m1_e0	*	59.6747	64.1509	55.7823	82.2678	34	19	82	65	50	76.9231
gduggal-snapvard	INDEL	I6_15	map_l125_m2_e0	*	60.0321	64.1509	56.4103	82.6087	34	19	88	68	53	77.9412
gduggal-snapvard	INDEL	I6_15	map_l125_m2_e1	*	60.1890	64.1509	56.6879	82.9162	34	19	89	68	53	77.9412
gduggal-snapfb	INDEL	D6_15	segdup	hetalt	81.9277	69.3878	100.0000	90.0000	34	15	8	0	0
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_SimpleRepeat_homopolymer_gt10	het	68.0000	77.2727	60.7143	97.3585	34	10	34	22	12	54.5455
gduggal-snapplat	INDEL	D6_15	segdup	het	48.4621	36.9565	70.3704	96.6376	34	58	19	8	1	12.5000
gduggal-snapplat	INDEL	I1_5	map_l250_m2_e0	homalt	85.0304	75.5556	97.2222	97.5121	34	11	35	1	0	0.0000
gduggal-snapplat	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	26.6350	19.2090	43.4211	75.9494	34	143	33	43	0	0.0000
ghariani-varprowl	SNP	*	lowcmp_SimpleRepeat_diTR_51to200	*	78.1609	80.9524	75.5556	97.2477	34	8	34	11	2	18.1818
asubramanian-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	91.8919	87.1795	97.1429	60.6742	34	5	34	1	1	100.0000
asubramanian-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	98.5507	97.1429	100.0000	77.3006	34	1	37	0	0
asubramanian-gatk	INDEL	I16_PLUS	lowcmp_SimpleRepeat_triTR_11to50	*	95.7746	91.8919	100.0000	79.0000	34	3	42	0	0
anovak-vg	INDEL	D16_PLUS	map_l100_m2_e0	*	52.2346	37.7778	84.6154	88.4956	34	56	33	6	5	83.3333
anovak-vg	INDEL	D1_5	map_l250_m1_e0	homalt	73.0707	59.6491	94.2857	96.1957	34	23	33	2	2	100.0000
anovak-vg	INDEL	D6_15	map_l150_m1_e0	het	80.3240	87.1795	74.4681	92.3948	34	5	35	12	7	58.3333
anovak-vg	SNP	tv	tech_badpromoters	homalt	93.1507	87.1795	100.0000	36.5385	34	5	33	0	0
dgrover-gatk	INDEL	D6_15	map_l125_m2_e0	homalt	97.1429	94.4444	100.0000	89.6970	34	2	34	0	0
egarrison-hhga	INDEL	*	map_l125_m2_e0	hetalt	89.4737	80.9524	100.0000	94.1288	34	8	31	0	0
egarrison-hhga	INDEL	*	map_l125_m2_e1	hetalt	87.0715	79.0698	96.8750	94.1392	34	9	31	1	0	0.0000
ckim-isaac	INDEL	D1_5	map_l100_m2_e1	hetalt	77.1930	66.6667	91.6667	89.2216	34	17	33	3	3	100.0000
ckim-isaac	INDEL	I1_5	map_l100_m2_e1	hetalt	83.9506	75.5556	94.4444	88.0795	34	11	34	2	2	100.0000
egarrison-hhga	SNP	tv	lowcmp_SimpleRepeat_quadTR_51to200	*	86.0759	80.9524	91.8919	88.7195	34	8	34	3	2	66.6667
eyeh-varpipe	INDEL	*	tech_badpromoters	het	91.9609	87.1795	97.2973	46.3768	34	5	36	1	1	100.0000
egarrison-hhga	INDEL	D1_5	map_l100_m1_e0	hetalt	82.8962	72.3404	97.0588	92.0188	34	13	33	1	1	100.0000
ckim-isaac	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	88.3117	82.9268	94.4444	87.1429	34	7	34	2	1	50.0000
ckim-vqsr	SNP	tv	lowcmp_SimpleRepeat_quadTR_51to200	het	95.7746	94.4444	97.1429	88.4488	34	2	34	1	0	0.0000
dgrover-gatk	INDEL	*	tech_badpromoters	homalt	100.0000	100.0000	100.0000	57.1429	33	0	33	0	0
dgrover-gatk	INDEL	D16_PLUS	map_siren	homalt	91.6667	97.0588	86.8421	94.1267	33	1	33	5	0	0.0000
dgrover-gatk	INDEL	D1_5	map_l250_m0_e0	het	92.9577	100.0000	86.8421	97.5641	33	0	33	5	0	0.0000
ckim-isaac	INDEL	D16_PLUS	segdup	het	86.4020	89.1892	83.7838	91.6290	33	4	31	6	3	50.0000
ckim-isaac	INDEL	I1_5	map_l100_m1_e0	hetalt	83.4783	75.0000	94.1176	87.1698	33	11	32	2	2	100.0000
ckim-isaac	INDEL	I1_5	map_l100_m2_e0	hetalt	83.4783	75.0000	94.1176	88.4354	33	11	32	2	2	100.0000
ckim-vqsr	INDEL	D16_PLUS	map_siren	homalt	95.6522	97.0588	94.2857	94.7368	33	1	33	2	0	0.0000
ckim-vqsr	INDEL	D1_5	map_l250_m0_e0	het	84.6154	100.0000	73.3333	98.2353	33	0	33	12	0	0.0000
ckim-vqsr	INDEL	D6_15	map_l125_m1_e0	homalt	98.5075	97.0588	100.0000	89.5899	33	1	33	0	0
ckim-vqsr	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	97.0588	94.2857	100.0000	75.5245	33	2	35	0	0
ckim-isaac	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_51to200	*	52.8000	35.8696	100.0000	62.5000	33	59	33	0	0
ckim-vqsr	INDEL	*	tech_badpromoters	homalt	100.0000	100.0000	100.0000	57.1429	33	0	33	0	0
egarrison-hhga	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	92.9577	91.6667	94.2857	75.0000	33	3	33	2	2	100.0000
egarrison-hhga	SNP	*	lowcmp_SimpleRepeat_diTR_51to200	*	85.7143	78.5714	94.2857	95.4368	33	9	33	2	2	100.0000
egarrison-hhga	SNP	tv	tech_badpromoters	het	97.0588	100.0000	94.2857	41.6667	33	0	33	2	0	0.0000
egarrison-hhga	INDEL	*	tech_badpromoters	homalt	100.0000	100.0000	100.0000	60.2410	33	0	33	0	0
egarrison-hhga	INDEL	D6_15	map_l125_m1_e0	homalt	97.0588	97.0588	97.0588	87.4539	33	1	33	1	1	100.0000
egarrison-hhga	INDEL	I16_PLUS	HG002compoundhet	het	50.9653	70.2128	40.0000	86.0681	33	14	36	54	38	70.3704
egarrison-hhga	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	94.2857	94.2857	94.2857	79.7688	33	2	33	2	1	50.0000
egarrison-hhga	INDEL	I16_PLUS	lowcmp_SimpleRepeat_triTR_11to50	*	92.9577	89.1892	97.0588	75.8865	33	4	33	1	1	100.0000
jlack-gatk	INDEL	I6_15	map_l100_m1_e0	homalt	97.0588	100.0000	94.2857	87.3646	33	0	33	2	0	0.0000
jlack-gatk	INDEL	I6_15	map_l100_m2_e0	homalt	97.0588	100.0000	94.2857	88.4868	33	0	33	2	0	0.0000
jlack-gatk	INDEL	I6_15	map_l100_m2_e1	homalt	97.0588	100.0000	94.2857	88.7097	33	0	33	2	0	0.0000

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