PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
36951-37000 / 86044 show all | |||||||||||||||
| ckim-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 96.0000 | 92.3077 | 100.0000 | 56.6265 | 36 | 3 | 36 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | map_l125_m2_e1 | homalt | 98.6301 | 97.2973 | 100.0000 | 89.5652 | 36 | 1 | 36 | 0 | 0 | ||
| ckim-dragen | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 97.2973 | 97.2973 | 97.2973 | 87.1972 | 36 | 1 | 36 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 96.0000 | 92.3077 | 100.0000 | 56.6265 | 36 | 3 | 36 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 97.2973 | 97.2973 | 97.2973 | 61.4583 | 36 | 1 | 36 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.6301 | 100.0000 | 97.2973 | 70.8661 | 36 | 0 | 36 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D6_15 | func_cds | * | 84.7059 | 83.7209 | 85.7143 | 51.7241 | 36 | 7 | 36 | 6 | 2 | 33.3333 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 63.1287 | 83.7209 | 50.6667 | 72.8261 | 36 | 7 | 38 | 37 | 25 | 67.5676 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 32.8326 | 22.5000 | 60.7143 | 91.1532 | 36 | 124 | 34 | 22 | 12 | 54.5455 | |
| ciseli-custom | INDEL | D6_15 | map_l125_m1_e0 | het | 57.0736 | 54.6875 | 59.6774 | 93.7183 | 35 | 29 | 37 | 25 | 4 | 16.0000 | |
| ckim-dragen | INDEL | * | map_l125_m1_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 92.2049 | 35 | 5 | 35 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 35 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 80.9783 | 35 | 0 | 35 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | map_l125_m2_e1 | homalt | 95.8904 | 94.5946 | 97.2222 | 91.1548 | 35 | 2 | 35 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 76.2821 | 35 | 0 | 37 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 83.7209 | 35 | 0 | 35 | 0 | 0 | ||
| ckim-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 85.1695 | 35 | 0 | 35 | 0 | 0 | ||
| ckim-isaac | INDEL | * | tech_badpromoters | het | 94.5946 | 89.7436 | 100.0000 | 48.4375 | 35 | 4 | 33 | 0 | 0 | ||
| ckim-gatk | INDEL | * | map_l125_m1_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 93.0556 | 35 | 5 | 35 | 0 | 0 | ||
| ckim-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 95.8904 | 94.5946 | 97.2222 | 86.4151 | 35 | 2 | 35 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 95.8904 | 94.5946 | 97.2222 | 60.8696 | 35 | 2 | 35 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | D6_15 | map_l125_m2_e0 | homalt | 98.5915 | 97.2222 | 100.0000 | 89.6450 | 35 | 1 | 35 | 0 | 0 | ||
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 97.2222 | 100.0000 | 94.5946 | 84.2553 | 35 | 0 | 35 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 90.9091 | 83.3333 | 100.0000 | 97.6367 | 35 | 7 | 35 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | tech_badpromoters | het | 94.5946 | 89.7436 | 100.0000 | 50.0000 | 35 | 4 | 35 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_l125_m2_e0 | homalt | 98.5915 | 97.2222 | 100.0000 | 86.7925 | 35 | 1 | 35 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.8170 | 35 | 0 | 37 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 84.9138 | 35 | 0 | 35 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | map_l125_m2_e0 | homalt | 98.5915 | 97.2222 | 100.0000 | 86.7925 | 35 | 1 | 35 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 76.7296 | 35 | 0 | 37 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 84.0183 | 35 | 0 | 35 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | map_l125_m2_e0 | homalt | 98.5915 | 97.2222 | 100.0000 | 87.6761 | 35 | 1 | 35 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 76.7296 | 35 | 0 | 37 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m2_e1 | het | 75.4265 | 68.6275 | 83.7209 | 82.8685 | 35 | 16 | 36 | 7 | 7 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 29.7872 | 24.6479 | 37.6344 | 33.0935 | 35 | 107 | 35 | 58 | 57 | 98.2759 | |
| eyeh-varpipe | INDEL | I6_15 | func_cds | * | 88.6076 | 81.3953 | 97.2222 | 32.0755 | 35 | 8 | 35 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 97.2222 | 94.5946 | 100.0000 | 90.6615 | 35 | 2 | 24 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D6_15 | map_l125_m2_e1 | homalt | 95.8904 | 94.5946 | 97.2222 | 91.6473 | 35 | 2 | 35 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 13.1543 | 7.1138 | 87.1795 | 80.6931 | 35 | 457 | 34 | 5 | 4 | 80.0000 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 83.3333 | 83.3333 | 83.3333 | 99.3536 | 35 | 7 | 40 | 8 | 5 | 62.5000 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 82.1148 | 70.0000 | 99.3007 | 50.8591 | 35 | 15 | 142 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 79.5455 | 83.3333 | 76.0870 | 91.5905 | 35 | 7 | 35 | 11 | 1 | 9.0909 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 72.9167 | 57.3770 | 100.0000 | 85.5967 | 35 | 26 | 35 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 64.8148 | 47.9452 | 100.0000 | 90.3315 | 35 | 38 | 35 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 79.5455 | 67.3077 | 97.2222 | 68.9655 | 35 | 17 | 35 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 83.3333 | 71.4286 | 100.0000 | 70.1613 | 35 | 14 | 37 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 84.0183 | 35 | 0 | 35 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | map_l125_m2_e0 | homalt | 98.5915 | 97.2222 | 100.0000 | 89.4578 | 35 | 1 | 35 | 0 | 0 | ||
| rpoplin-dv42 | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 92.5156 | 35 | 0 | 36 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 87.5000 | 79.5455 | 97.2222 | 97.0322 | 35 | 9 | 35 | 1 | 1 | 100.0000 | |