PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
36851-36900 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | I6_15 | map_l125_m2_e1 | * | 77.1277 | 67.9245 | 89.2157 | 81.6876 | 36 | 17 | 91 | 11 | 9 | 81.8182 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 73.3373 | 87.8049 | 62.9630 | 84.4380 | 36 | 5 | 34 | 20 | 7 | 35.0000 | |
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 69.1849 | 85.7143 | 58.0000 | 87.4372 | 36 | 6 | 29 | 21 | 4 | 19.0476 | |
| gduggal-bwafb | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 90.0000 | 81.8182 | 100.0000 | 92.7152 | 36 | 8 | 22 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 90.0000 | 81.8182 | 100.0000 | 93.3131 | 36 | 8 | 22 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | func_cds | * | 90.0000 | 83.7209 | 97.2973 | 35.0877 | 36 | 7 | 36 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l100_m0_e0 | het | 74.2268 | 60.0000 | 97.2973 | 96.7965 | 36 | 24 | 36 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | segdup | hetalt | 85.7143 | 75.0000 | 100.0000 | 97.9821 | 36 | 12 | 36 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I6_15 | func_cds | * | 84.8678 | 83.7209 | 86.0465 | 37.6812 | 36 | 7 | 37 | 6 | 6 | 100.0000 | |
| gduggal-bwavard | SNP | ti | tech_badpromoters | homalt | 93.5065 | 87.8049 | 100.0000 | 38.9831 | 36 | 5 | 36 | 0 | 0 | ||
| gduggal-bwavard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 92.2739 | 87.8049 | 97.2222 | 88.5350 | 36 | 5 | 35 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 81.8182 | 69.2308 | 100.0000 | 87.0748 | 36 | 16 | 38 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | func_cds | * | 91.1392 | 83.7209 | 100.0000 | 64.3564 | 36 | 7 | 36 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | segdup | * | 67.1246 | 62.0690 | 73.0769 | 90.0192 | 36 | 22 | 38 | 14 | 14 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | func_cds | * | 87.9743 | 83.7209 | 92.6829 | 46.7532 | 36 | 7 | 38 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l125_m1_e0 | * | 76.9628 | 67.9245 | 88.7755 | 80.5169 | 36 | 17 | 87 | 11 | 9 | 81.8182 | |
| eyeh-varpipe | INDEL | I6_15 | map_l125_m2_e0 | * | 77.1277 | 67.9245 | 89.2157 | 81.4208 | 36 | 17 | 91 | 11 | 9 | 81.8182 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 97.2973 | 97.2973 | 97.2973 | 87.7483 | 36 | 1 | 36 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 96.0000 | 92.3077 | 100.0000 | 57.6471 | 36 | 3 | 36 | 0 | 0 | ||
| astatham-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 97.2973 | 97.2973 | 97.2973 | 62.2449 | 36 | 1 | 36 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | D6_15 | map_l125_m2_e1 | homalt | 98.6301 | 97.2973 | 100.0000 | 89.3175 | 36 | 1 | 36 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 96.0000 | 100.0000 | 92.3077 | 68.2927 | 36 | 0 | 36 | 3 | 3 | 100.0000 | |
| astatham-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 93.5065 | 87.8049 | 100.0000 | 93.0097 | 36 | 5 | 36 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 90.0000 | 81.8182 | 100.0000 | 97.4286 | 36 | 8 | 36 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 97.2973 | 97.2973 | 97.2973 | 87.0175 | 36 | 1 | 36 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 96.0000 | 92.3077 | 100.0000 | 57.6471 | 36 | 3 | 36 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 97.3328 | 97.2973 | 97.3684 | 61.6162 | 36 | 1 | 37 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | I1_5 | map_siren | hetalt | 0.0000 | 32.1429 | 0.0000 | 0.0000 | 36 | 76 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 40.2391 | 29.5082 | 63.2353 | 29.4815 | 36 | 86 | 301 | 175 | 141 | 80.5714 | |
| anovak-vg | SNP | ti | HG002complexvar | hetalt | 0.0000 | 17.3913 | 0.0000 | 0.0000 | 36 | 171 | 0 | 0 | 0 | ||
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 83.0165 | 87.8049 | 78.7234 | 89.4144 | 36 | 5 | 37 | 10 | 7 | 70.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 97.2973 | 97.2973 | 97.2973 | 60.6383 | 36 | 1 | 36 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l125_m2_e1 | homalt | 98.6301 | 97.2973 | 100.0000 | 89.3491 | 36 | 1 | 36 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 96.0000 | 100.0000 | 92.3077 | 68.5484 | 36 | 0 | 36 | 3 | 3 | 100.0000 | |
| bgallagher-sentieon | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 93.5065 | 87.8049 | 100.0000 | 92.9688 | 36 | 5 | 36 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 98.6301 | 97.2973 | 100.0000 | 88.0399 | 36 | 1 | 36 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_l125_m2_e1 | homalt | 98.6301 | 97.2973 | 100.0000 | 86.8132 | 36 | 1 | 36 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 98.6301 | 97.2973 | 100.0000 | 63.2653 | 36 | 1 | 36 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | map_l125_m2_e1 | homalt | 98.6301 | 97.2973 | 100.0000 | 86.7647 | 36 | 1 | 36 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.6301 | 100.0000 | 97.2973 | 69.4215 | 36 | 0 | 36 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 92.3077 | 87.8049 | 97.2973 | 93.3573 | 36 | 5 | 36 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 96.0000 | 100.0000 | 92.3077 | 68.5484 | 36 | 0 | 36 | 3 | 3 | 100.0000 | |
| jlack-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 93.5065 | 87.8049 | 100.0000 | 92.8713 | 36 | 5 | 36 | 0 | 0 | ||
| jli-custom | INDEL | * | map_l125_m1_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 92.6078 | 36 | 4 | 36 | 0 | 0 | ||
| jli-custom | INDEL | * | tech_badpromoters | het | 96.0000 | 92.3077 | 100.0000 | 51.3514 | 36 | 3 | 36 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 98.6301 | 97.2973 | 100.0000 | 87.0504 | 36 | 1 | 36 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 97.2973 | 100.0000 | 94.7368 | 68.3333 | 36 | 0 | 36 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | * | tech_badpromoters | het | 96.0000 | 92.3077 | 100.0000 | 51.3514 | 36 | 3 | 36 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 98.6301 | 97.2973 | 100.0000 | 87.8788 | 36 | 1 | 36 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | map_l125_m2_e1 | homalt | 98.6301 | 97.2973 | 100.0000 | 87.6289 | 36 | 1 | 36 | 0 | 0 | ||