PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 727 728 729 730 731 732 733 734 735 ... 1720 1721 » 36501-36550 / 86044 show all
ltrigg-rtg2	INDEL	D1_5	map_l100_m1_e0	hetalt	90.6977	82.9787	100.0000	93.6027	39	8	38	0	0
ltrigg-rtg2	INDEL	D6_15	map_l150_m1_e0	het	100.0000	100.0000	100.0000	89.0141	39	0	39	0	0
ltrigg-rtg2	INDEL	I16_PLUS	map_siren	het	86.6667	79.5918	95.1220	66.6667	39	10	39	2	0	0.0000
ltrigg-rtg2	INDEL	I1_5	map_l100_m1_e0	hetalt	93.9759	88.6364	100.0000	93.3227	39	5	42	0	0
ltrigg-rtg2	INDEL	I1_5	map_l100_m2_e0	hetalt	93.9759	88.6364	100.0000	93.8053	39	5	42	0	0
ltrigg-rtg2	SNP	*	map_l100_m2_e0	hetalt	96.2963	92.8571	100.0000	66.0870	39	3	39	0	0
qzeng-custom	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_51to200	hetalt	0.0000	79.5918	0.0000	0.0000	39	10	0	0	0
qzeng-custom	INDEL	D6_15	func_cds	*	85.9267	90.6977	81.6327	50.0000	39	4	40	9	1	11.1111
jmaeng-gatk	INDEL	D6_15	map_l150_m1_e0	het	97.5000	100.0000	95.1220	95.6568	39	0	39	2	0	0.0000
jmaeng-gatk	SNP	*	lowcmp_SimpleRepeat_quadTR_51to200	homalt	96.2963	95.1220	97.5000	92.3225	39	2	39	1	1	100.0000
ltrigg-rtg1	INDEL	I1_5	map_l100_m1_e0	hetalt	92.9362	88.6364	97.6744	92.8808	39	5	42	1	1	100.0000
ltrigg-rtg1	INDEL	I1_5	map_l100_m2_e0	hetalt	92.9362	88.6364	97.6744	93.3846	39	5	42	1	1	100.0000
ltrigg-rtg2	INDEL	*	tech_badpromoters	het	97.5000	100.0000	95.1220	44.5946	39	0	39	2	0	0.0000
jpowers-varprowl	INDEL	D6_15	segdup	homalt	86.6667	78.0000	97.5000	90.3614	39	11	39	1	1	100.0000
jpowers-varprowl	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	75.7282	95.1220	62.9032	93.1188	39	2	39	23	11	47.8261
jli-custom	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_51to200	*	89.6552	84.7826	95.1220	62.7273	39	7	39	2	2	100.0000
jli-custom	INDEL	D6_15	map_l150_m1_e0	het	100.0000	100.0000	100.0000	92.4272	39	0	39	0	0
jmaeng-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_homopolymer_gt10	het	93.9759	88.6364	100.0000	97.0787	39	5	39	0	0
ltrigg-rtg1	INDEL	*	tech_badpromoters	het	98.7342	100.0000	97.5000	43.6620	39	0	39	1	0	0.0000
ltrigg-rtg1	INDEL	D1_5	map_l100_m2_e0	hetalt	89.6552	81.2500	100.0000	93.6982	39	9	38	0	0
ltrigg-rtg1	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	78.8448	66.1017	97.6744	72.7848	39	20	42	1	1	100.0000
ltrigg-rtg1	INDEL	I16_PLUS	lowcmp_SimpleRepeat_homopolymer_6to10	*	90.6977	82.9787	100.0000	65.2174	39	8	40	0	0
jmaeng-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	97.5000	95.1220	100.0000	91.7895	39	2	39	0	0
jmaeng-gatk	SNP	tv	lowcmp_SimpleRepeat_quadTR_51to200	*	95.1220	92.8571	97.5000	89.8219	39	3	39	1	1	100.0000
jpowers-varprowl	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	0.0000	0.4818	0.0000	0.0000	39	8056	0	0	0
jpowers-varprowl	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	0.0000	0.4772	0.0000	0.0000	39	8134	0	0	0
ckim-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_gt10	het	92.8571	92.8571	92.8571	99.3463	39	3	39	3	0	0.0000
ckim-gatk	INDEL	D6_15	map_l150_m1_e0	het	95.1220	100.0000	90.6977	95.4974	39	0	39	4	0	0.0000
ckim-dragen	INDEL	D6_15	map_l150_m1_e0	het	97.5000	100.0000	95.1220	93.8806	39	0	39	2	0	0.0000
ckim-dragen	SNP	*	lowcmp_SimpleRepeat_quadTR_51to200	homalt	97.5000	95.1220	100.0000	91.0112	39	2	48	0	0
ciseli-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	0.0000	4.1314	0.0000	0.0000	39	905	0	0	0
ciseli-custom	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_51to200	*	32.1213	27.4648	38.6792	40.1130	39	103	41	65	65	100.0000
ciseli-custom	INDEL	D6_15	map_l125_m2_e0	het	57.4870	54.9296	60.2941	93.6685	39	32	41	27	5	18.5185
ciseli-custom	INDEL	D6_15	map_l125_m2_e1	het	57.4870	54.9296	60.2941	93.7672	39	32	41	27	5	18.5185
ciseli-custom	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	0.0000	1.5360	0.0000	0.0000	39	2500	0	0	0
ciseli-custom	SNP	ti	tech_badpromoters	homalt	95.0609	95.1220	95.0000	49.3671	39	2	38	2	1	50.0000
cchapple-custom	INDEL	*	map_l125_m2_e0	hetalt	0.0000	92.8571	0.0000	0.0000	39	3	0	0	0
cchapple-custom	INDEL	*	map_l125_m2_e1	hetalt	0.0000	90.6977	0.0000	0.0000	39	4	0	0	0
ciseli-custom	INDEL	*	lowcmp_SimpleRepeat_triTR_51to200	homalt	45.6140	82.9787	31.4516	52.4904	39	8	39	85	76	89.4118
asubramanian-gatk	SNP	tv	map_siren	hetalt	65.0000	48.1481	100.0000	83.7500	39	42	39	0	0
asubramanian-gatk	INDEL	I16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	homalt	91.1519	95.1220	87.5000	86.9767	39	2	49	7	6	85.7143
asubramanian-gatk	INDEL	I6_15	func_cds	*	93.9759	90.6977	97.5000	42.8571	39	4	39	1	1	100.0000
asubramanian-gatk	SNP	*	lowcmp_SimpleRepeat_diTR_51to200	*	77.2277	92.8571	66.1017	96.4046	39	3	39	20	0	0.0000
asubramanian-gatk	SNP	*	map_siren	hetalt	65.0000	48.1481	100.0000	84.2105	39	42	39	0	0
anovak-vg	INDEL	I1_5	map_l250_m1_e0	homalt	69.3408	88.6364	56.9444	94.4573	39	5	41	31	28	90.3226
bgallagher-sentieon	INDEL	D6_15	map_l150_m1_e0	het	98.7342	100.0000	97.5000	94.2775	39	0	39	1	0	0.0000
bgallagher-sentieon	SNP	*	map_l100_m1_e0	hetalt	97.5000	95.1220	100.0000	70.4545	39	2	39	0	0
bgallagher-sentieon	SNP	tv	map_l100_m1_e0	hetalt	97.5000	95.1220	100.0000	70.4545	39	2	39	0	0
anovak-vg	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	het	30.5882	23.0769	45.3488	45.7413	39	130	78	94	74	78.7234
anovak-vg	INDEL	D6_15	map_l150_m2_e1	het	79.8362	82.9787	76.9231	92.2619	39	8	40	12	7	58.3333

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge