PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
36351-36400 / 86044 show all | |||||||||||||||
| ciseli-custom | INDEL | I6_15 | map_siren | het | 39.1268 | 27.9720 | 65.0794 | 86.1842 | 40 | 103 | 41 | 22 | 21 | 95.4545 | |
| ckim-dragen | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 90.9091 | 97.5610 | 85.1064 | 89.8488 | 40 | 1 | 40 | 7 | 0 | 0.0000 | |
| ckim-dragen | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 95.2381 | 95.2381 | 95.2381 | 89.9522 | 40 | 2 | 40 | 2 | 0 | 0.0000 | |
| ckim-dragen | SNP | tv | map_l100_m1_e0 | hetalt | 98.7654 | 97.5610 | 100.0000 | 78.7234 | 40 | 1 | 40 | 0 | 0 | ||
| ckim-gatk | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 91.9540 | 85.1064 | 100.0000 | 91.5789 | 40 | 7 | 40 | 0 | 0 | ||
| ckim-gatk | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 90.9091 | 83.3333 | 100.0000 | 91.9922 | 40 | 8 | 41 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 89.4812 | 86.9565 | 92.1569 | 51.8868 | 40 | 6 | 47 | 4 | 4 | 100.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l100_m1_e0 | het | 84.8574 | 86.9565 | 82.8571 | 91.8320 | 40 | 6 | 58 | 12 | 7 | 58.3333 | |
| cchapple-custom | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 0.0000 | 90.9091 | 0.0000 | 0.0000 | 40 | 4 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 0.0000 | 90.9091 | 0.0000 | 0.0000 | 40 | 4 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 98.7654 | 97.5610 | 100.0000 | 86.3469 | 40 | 1 | 37 | 0 | 0 | ||
| ciseli-custom | INDEL | * | map_l250_m0_e0 | * | 55.0520 | 51.2821 | 59.4203 | 98.6428 | 40 | 38 | 41 | 28 | 8 | 28.5714 | |
| ciseli-custom | SNP | ti | tech_badpromoters | het | 79.2079 | 90.9091 | 70.1754 | 39.3617 | 40 | 4 | 40 | 17 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 91.9540 | 97.5610 | 86.9565 | 88.1748 | 40 | 1 | 40 | 6 | 6 | 100.0000 | |
| ckim-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 98.7654 | 97.5610 | 100.0000 | 91.7355 | 40 | 1 | 40 | 0 | 0 | ||
| ckim-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.3855 | 95.2381 | 97.5610 | 89.5939 | 40 | 2 | 40 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 69.2913 | 80.0000 | 61.1111 | 70.0000 | 40 | 10 | 33 | 21 | 16 | 76.1905 | |
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 85.3255 | 78.4314 | 93.5484 | 94.5993 | 40 | 11 | 29 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 89.8876 | 97.5610 | 83.3333 | 88.5167 | 40 | 1 | 40 | 8 | 7 | 87.5000 | |
| jlack-gatk | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 90.1720 | 40 | 4 | 40 | 0 | 0 | ||
| jlack-gatk | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 90.9502 | 40 | 4 | 40 | 0 | 0 | ||
| jlack-gatk | SNP | * | map_l100_m2_e0 | hetalt | 94.1176 | 95.2381 | 93.0233 | 86.0841 | 40 | 2 | 40 | 3 | 3 | 100.0000 | |
| jlack-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 97.5610 | 95.2381 | 100.0000 | 89.6641 | 40 | 2 | 40 | 0 | 0 | ||
| jlack-gatk | SNP | tv | map_l100_m2_e0 | hetalt | 94.1176 | 95.2381 | 93.0233 | 86.0841 | 40 | 2 | 40 | 3 | 3 | 100.0000 | |
| hfeng-pmm2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 97.5610 | 97.5610 | 97.5610 | 92.5046 | 40 | 1 | 40 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | * | map_l100_m2_e0 | hetalt | 96.3855 | 95.2381 | 97.5610 | 68.4615 | 40 | 2 | 40 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | tv | map_l100_m2_e0 | hetalt | 96.3855 | 95.2381 | 97.5610 | 68.4615 | 40 | 2 | 40 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 91.9540 | 97.5610 | 86.9565 | 86.2687 | 40 | 1 | 40 | 6 | 6 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 86.5995 | 78.4314 | 96.6667 | 94.1860 | 40 | 11 | 29 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 86.1592 | 40 | 4 | 40 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 87.2204 | 40 | 4 | 40 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 95.2381 | 90.9091 | 100.0000 | 75.4601 | 40 | 4 | 40 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | func_cds | * | 94.1176 | 93.0233 | 95.2381 | 54.8387 | 40 | 3 | 40 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 97.5610 | 97.5610 | 97.5610 | 91.2206 | 40 | 1 | 40 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | * | map_l100_m2_e0 | hetalt | 94.1176 | 95.2381 | 93.0233 | 86.3924 | 40 | 2 | 40 | 3 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | map_l100_m2_e0 | hetalt | 94.1176 | 95.2381 | 93.0233 | 86.3924 | 40 | 2 | 40 | 3 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l250_m1_e0 | homalt | 94.1176 | 90.9091 | 97.5610 | 92.8070 | 40 | 4 | 40 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | * | map_l125_m2_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 93.3775 | 40 | 2 | 40 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | map_l125_m2_e1 | hetalt | 96.3855 | 93.0233 | 100.0000 | 93.5065 | 40 | 3 | 40 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l125_m2_e0 | * | 45.3591 | 31.7460 | 79.4118 | 95.4485 | 40 | 86 | 27 | 7 | 1 | 14.2857 | |
| gduggal-snapplat | INDEL | D6_15 | map_l125_m2_e1 | * | 44.8505 | 31.2500 | 79.4118 | 95.5145 | 40 | 88 | 27 | 7 | 1 | 14.2857 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 8.8851 | 13.8889 | 6.5319 | 87.2673 | 40 | 248 | 42 | 601 | 6 | 0.9983 | |
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 32.5074 | 80.0000 | 20.3980 | 59.7194 | 40 | 10 | 41 | 160 | 156 | 97.5000 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 44.9438 | 31.4961 | 78.4314 | 66.6667 | 40 | 87 | 40 | 11 | 11 | 100.0000 | |
| gduggal-snapvard | INDEL | D1_5 | map_siren | hetalt | 0.0000 | 47.6190 | 0.0000 | 0.0000 | 40 | 44 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | map_l250_m2_e0 | homalt | 92.5888 | 88.8889 | 96.6102 | 92.8571 | 40 | 5 | 57 | 2 | 1 | 50.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 12.8457 | 8.1136 | 30.8219 | 63.7717 | 40 | 453 | 45 | 101 | 70 | 69.3069 | |
| anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 39.9479 | 48.7805 | 33.8235 | 55.5556 | 40 | 42 | 69 | 135 | 108 | 80.0000 | |
| anovak-vg | INDEL | I1_5 | map_l250_m2_e0 | homalt | 68.7117 | 88.8889 | 56.0000 | 95.0723 | 40 | 5 | 42 | 33 | 30 | 90.9091 | |
| astatham-gatk | INDEL | * | map_l125_m2_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 93.1507 | 40 | 2 | 40 | 0 | 0 | ||