PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
36151-36200 / 86044 show all | |||||||||||||||
| hfeng-pmm2 | SNP | ti | tech_badpromoters | homalt | 98.7952 | 100.0000 | 97.6190 | 43.2432 | 41 | 0 | 41 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | SNP | tv | map_l100_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 76.9663 | 41 | 0 | 41 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 93.1818 | 89.1304 | 97.6190 | 64.1026 | 41 | 5 | 41 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 95.3488 | 91.1111 | 100.0000 | 90.8686 | 41 | 4 | 41 | 0 | 0 | ||
| jlack-gatk | SNP | * | map_l100_m2_e1 | hetalt | 94.2529 | 95.3488 | 93.1818 | 85.8065 | 41 | 2 | 41 | 3 | 3 | 100.0000 | |
| jlack-gatk | SNP | ti | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 42.2535 | 41 | 0 | 41 | 0 | 0 | ||
| jlack-gatk | SNP | tv | map_l100_m2_e1 | hetalt | 94.2529 | 95.3488 | 93.1818 | 85.8065 | 41 | 2 | 41 | 3 | 3 | 100.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 92.1348 | 89.1304 | 95.3488 | 63.8655 | 41 | 5 | 41 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | HG002compoundhet | het | 89.2228 | 87.2340 | 91.3043 | 94.7005 | 41 | 6 | 21 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 94.2529 | 100.0000 | 89.1304 | 87.6011 | 41 | 0 | 41 | 5 | 5 | 100.0000 | |
| eyeh-varpipe | SNP | * | map_l100_m1_e0 | hetalt | 99.6622 | 100.0000 | 99.3266 | 65.7044 | 41 | 0 | 295 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | SNP | ti | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 44.5946 | 41 | 0 | 41 | 0 | 0 | ||
| eyeh-varpipe | SNP | tv | map_l100_m1_e0 | hetalt | 99.3548 | 100.0000 | 98.7179 | 69.3517 | 41 | 0 | 154 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 19.2500 | 18.4685 | 20.1005 | 60.4374 | 41 | 181 | 40 | 159 | 151 | 94.9686 | |
| gduggal-bwafb | SNP | ti | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 46.0526 | 41 | 0 | 41 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | map_l100_m2_e0 | hetalt | 98.7952 | 97.6190 | 100.0000 | 78.0749 | 41 | 1 | 41 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l100_m1_e0 | * | 63.5659 | 47.1264 | 97.6190 | 95.5603 | 41 | 46 | 41 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | map_l100_m2_e0 | * | 62.1212 | 45.5556 | 97.6190 | 95.9184 | 41 | 49 | 41 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | I1_5 | map_l250_m1_e0 | homalt | 94.2529 | 93.1818 | 95.3488 | 91.6988 | 41 | 3 | 41 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | SNP | ti | tech_badpromoters | het | 95.3488 | 93.1818 | 97.6190 | 48.7805 | 41 | 3 | 41 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l125_m1_e0 | het | 78.0952 | 64.0625 | 100.0000 | 96.9675 | 41 | 23 | 41 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 80.3922 | 67.2131 | 100.0000 | 65.8120 | 41 | 20 | 40 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 94.2529 | 91.1111 | 97.6190 | 51.7241 | 41 | 4 | 41 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 69.8368 | 56.1644 | 92.3077 | 80.3030 | 41 | 32 | 12 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 76.5104 | 69.4915 | 85.1064 | 67.3611 | 41 | 18 | 40 | 7 | 7 | 100.0000 | |
| gduggal-bwafb | SNP | * | map_l100_m2_e0 | hetalt | 98.7952 | 97.6190 | 100.0000 | 78.0749 | 41 | 1 | 41 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m1_e0 | * | 58.6912 | 47.1264 | 77.7778 | 85.7520 | 41 | 46 | 42 | 12 | 12 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 43.1125 | 69.4915 | 31.2500 | 41.9501 | 41 | 18 | 80 | 176 | 164 | 93.1818 | |
| rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 97.6190 | 97.6190 | 97.6190 | 89.3401 | 41 | 1 | 41 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | map_l100_m1_e0 | hetalt | 96.4706 | 100.0000 | 93.1818 | 83.5821 | 41 | 0 | 41 | 3 | 3 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 92.1348 | 89.1304 | 95.3488 | 63.5593 | 41 | 5 | 41 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 95.3488 | 91.1111 | 100.0000 | 87.3065 | 41 | 4 | 41 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | func_cds | * | 97.6190 | 95.3488 | 100.0000 | 38.8060 | 41 | 2 | 41 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 97.6190 | 95.3488 | 100.0000 | 77.2222 | 41 | 2 | 41 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 92.1595 | 87.2340 | 97.6744 | 75.0000 | 41 | 6 | 42 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 82.4497 | 80.3922 | 84.6154 | 93.4233 | 41 | 10 | 33 | 6 | 3 | 50.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 93.1818 | 93.1818 | 93.1818 | 91.0569 | 41 | 3 | 41 | 3 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 93.1818 | 93.1818 | 93.1818 | 91.8519 | 41 | 3 | 41 | 3 | 0 | 0.0000 | |
| rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.8235 | 100.0000 | 97.6744 | 92.4429 | 41 | 0 | 42 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | SNP | * | map_l100_m1_e0 | hetalt | 96.4706 | 100.0000 | 93.1818 | 83.5821 | 41 | 0 | 41 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | ti | tech_badpromoters | homalt | 98.7952 | 100.0000 | 97.6190 | 46.1538 | 41 | 0 | 41 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | * | map_l100_m2_e1 | hetalt | 96.4706 | 95.3488 | 97.6190 | 68.1818 | 41 | 2 | 41 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | ti | tech_badpromoters | homalt | 98.7952 | 100.0000 | 97.6190 | 40.8451 | 41 | 0 | 41 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | tv | map_l100_m2_e1 | hetalt | 96.4706 | 95.3488 | 97.6190 | 68.1818 | 41 | 2 | 41 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 76.0523 | 82.0000 | 70.9091 | 81.7276 | 41 | 9 | 39 | 16 | 13 | 81.2500 | |
| rpoplin-dv42 | INDEL | * | map_l125_m2_e0 | hetalt | 95.3488 | 97.6190 | 93.1818 | 93.9643 | 41 | 1 | 41 | 3 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | * | map_l125_m2_e1 | hetalt | 94.2529 | 95.3488 | 93.1818 | 94.1411 | 41 | 2 | 41 | 3 | 0 | 0.0000 | |
| ltrigg-rtg1 | SNP | * | map_l100_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 64.0351 | 41 | 0 | 41 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | ti | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 41.4286 | 41 | 0 | 41 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | map_l100_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 64.0351 | 41 | 0 | 41 | 0 | 0 | ||