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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 719 720 721 722 723 724 725 726 727 ... 1720 1721 » 36101-36150 / 86044 show all
ckim-dragen	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	97.6744	97.6744	97.6744	79.9065	42	1	42	1	1	100.0000
ckim-dragen	INDEL	D6_15	segdup	hetalt	92.3077	85.7143	100.0000	89.7810	42	7	42	0	0
ckim-dragen	INDEL	I1_5	map_l100_m2_e1	hetalt	96.5517	93.3333	100.0000	88.3657	42	3	42	0	0
ckim-dragen	INDEL	I6_15	func_cds	*	97.6744	97.6744	97.6744	43.4211	42	1	42	1	1	100.0000
ckim-dragen	SNP	*	map_l100_m2_e1	hetalt	98.8235	97.6744	100.0000	80.8219	42	1	42	0	0
cchapple-custom	INDEL	I6_15	func_cds	*	97.7008	97.6744	97.7273	35.2941	42	1	43	1	1	100.0000
cchapple-custom	INDEL	I6_15	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	0.0000	95.4545	0.0000	0.0000	42	2	0	0	0
cchapple-custom	SNP	*	map_l100_m2_e0	hetalt	0.0000	100.0000	0.0000	0.0000	42	0	0	0	0
cchapple-custom	SNP	tv	map_l100_m2_e0	hetalt	0.0000	100.0000	0.0000	0.0000	42	0	0	0	0
ciseli-custom	INDEL	*	tech_badpromoters	*	58.7413	55.2632	62.6866	50.3704	42	34	42	25	17	68.0000
ckim-dragen	SNP	tv	map_l100_m2_e1	hetalt	98.8235	97.6744	100.0000	80.8219	42	1	42	0	0
ckim-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_homopolymer_gt10	het	95.4545	95.4545	95.4545	96.8594	42	2	42	2	0	0.0000
ckim-gatk	INDEL	D1_5	map_l100_m2_e1	hetalt	90.3226	82.3529	100.0000	91.7939	42	9	43	0	0
ckim-dragen	SNP	ti	tech_badpromoters	homalt	98.7952	100.0000	97.6190	43.2432	41	0	41	1	1	100.0000
ckim-dragen	SNP	tv	map_l100_m2_e0	hetalt	98.7952	97.6190	100.0000	81.1927	41	1	41	0	0
cchapple-custom	INDEL	*	lowcmp_SimpleRepeat_triTR_51to200	het	89.0808	82.0000	97.5000	46.5649	41	9	273	7	5	71.4286
cchapple-custom	INDEL	D16_PLUS	map_l100_m2_e0	het	83.6445	85.4167	81.9444	92.5620	41	7	59	13	7	53.8462
cchapple-custom	INDEL	D1_5	map_l100_m1_e0	hetalt	0.0000	87.2340	0.0000	0.0000	41	6	0	0	0
cchapple-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	94.2529	95.3488	93.1818	63.3333	41	2	41	3	3	100.0000
cchapple-custom	INDEL	I16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	homalt	96.4706	100.0000	93.1818	85.4305	41	0	41	3	3	100.0000
ciseli-custom	INDEL	D1_5	map_l250_m1_e0	homalt	76.6355	71.9298	82.0000	95.5791	41	16	41	9	6	66.6667
ciseli-custom	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	12.2983	7.6493	31.3559	74.7323	41	495	37	81	73	90.1235
ckim-gatk	INDEL	I1_5	map_l100_m1_e0	hetalt	96.4706	93.1818	100.0000	88.4507	41	3	41	0	0
ckim-gatk	INDEL	I1_5	map_l100_m2_e0	hetalt	96.4706	93.1818	100.0000	89.3782	41	3	41	0	0
ckim-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	96.4706	93.1818	100.0000	72.8477	41	3	41	0	0
ckim-gatk	SNP	ti	tech_badpromoters	homalt	98.7952	100.0000	97.6190	41.6667	41	0	41	1	1	100.0000
cchapple-custom	INDEL	I1_5	map_l100_m2_e1	hetalt	0.0000	91.1111	0.0000	0.0000	41	4	0	0	0
cchapple-custom	SNP	*	map_l100_m1_e0	hetalt	0.0000	100.0000	0.0000	0.0000	41	0	0	0	0
cchapple-custom	SNP	ti	tech_badpromoters	homalt	100.0000	100.0000	100.0000	38.8060	41	0	41	0	0
cchapple-custom	SNP	tv	map_l100_m1_e0	hetalt	0.0000	100.0000	0.0000	0.0000	41	0	0	0	0
ckim-dragen	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_51to200	*	92.1348	89.1304	95.3488	65.6000	41	5	41	2	2	100.0000
ckim-dragen	INDEL	D1_5	map_l100_m1_e0	hetalt	93.1818	87.2340	100.0000	90.0243	41	6	41	0	0
ckim-dragen	INDEL	I1_5	map_l100_m1_e0	hetalt	96.4706	93.1818	100.0000	87.5758	41	3	41	0	0
ckim-dragen	INDEL	I1_5	map_l100_m2_e0	hetalt	96.4706	93.1818	100.0000	88.4507	41	3	41	0	0
ckim-dragen	SNP	*	map_l100_m2_e0	hetalt	98.7952	97.6190	100.0000	81.1927	41	1	41	0	0
jlack-gatk	INDEL	D1_5	map_l100_m1_e0	hetalt	93.1818	87.2340	100.0000	90.9492	41	6	41	0	0
hfeng-pmm1	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_51to200	*	93.1818	89.1304	97.6190	65.2893	41	5	41	1	1	100.0000
hfeng-pmm1	INDEL	I16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	homalt	94.2529	100.0000	89.1304	87.5000	41	0	41	5	5	100.0000
hfeng-pmm3	INDEL	I16_PLUS	HG002compoundhet	het	91.1593	87.2340	95.4545	94.5679	41	6	21	1	1	100.0000
hfeng-pmm3	INDEL	I16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	homalt	94.2529	100.0000	89.1304	87.2928	41	0	41	5	5	100.0000
hfeng-pmm3	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_51to200	het	86.4727	80.3922	93.5484	94.4840	41	10	29	2	0	0.0000
hfeng-pmm3	INDEL	I1_5	map_l100_m1_e0	hetalt	96.4706	93.1818	100.0000	88.1503	41	3	41	0	0
hfeng-pmm3	INDEL	I1_5	map_l100_m2_e0	hetalt	96.4706	93.1818	100.0000	89.2670	41	3	41	0	0
hfeng-pmm3	SNP	*	map_l100_m1_e0	hetalt	100.0000	100.0000	100.0000	76.7045	41	0	41	0	0
hfeng-pmm3	SNP	ti	tech_badpromoters	homalt	100.0000	100.0000	100.0000	42.2535	41	0	41	0	0
hfeng-pmm3	SNP	tv	map_l100_m1_e0	hetalt	100.0000	100.0000	100.0000	76.7045	41	0	41	0	0
hfeng-pmm1	SNP	*	map_l100_m1_e0	hetalt	100.0000	100.0000	100.0000	76.8362	41	0	41	0	0
hfeng-pmm1	SNP	ti	tech_badpromoters	homalt	100.0000	100.0000	100.0000	42.2535	41	0	41	0	0
hfeng-pmm1	SNP	tv	map_l100_m1_e0	hetalt	100.0000	100.0000	100.0000	76.8362	41	0	41	0	0
hfeng-pmm2	SNP	*	map_l100_m1_e0	hetalt	100.0000	100.0000	100.0000	76.9663	41	0	41	0	0

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