PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 712 713 714 715 716 717 718 719 720 ... 1720 1721 » 35751-35800 / 86044 show all
asubramanian-gatk	INDEL	D6_15	map_l150_m2_e0	het	96.7033	95.6522	97.7778	95.1246	44	2	44	1	0	0.0000
asubramanian-gatk	INDEL	I16_PLUS	lowcmp_SimpleRepeat_homopolymer_6to10	*	95.6974	93.6170	97.8723	81.0484	44	3	46	1	1	100.0000
asubramanian-gatk	INDEL	I16_PLUS	segdup	*	95.6522	93.6170	97.7778	96.4143	44	3	44	1	1	100.0000
bgallagher-sentieon	INDEL	I16_PLUS	lowcmp_SimpleRepeat_homopolymer_6to10	*	95.6974	93.6170	97.8723	81.4229	44	3	46	1	1	100.0000
bgallagher-sentieon	INDEL	I1_5	map_l250_m1_e0	homalt	97.7778	100.0000	95.6522	93.8503	44	0	44	2	2	100.0000
bgallagher-sentieon	INDEL	I6_15	segdup	hetalt	98.8764	97.7778	100.0000	89.2421	44	1	44	0	0
anovak-vg	INDEL	I1_5	map_l150_m0_e0	het	49.5474	41.5094	61.4458	95.8870	44	62	51	32	4	12.5000
bgallagher-sentieon	INDEL	D16_PLUS	map_l100_m1_e0	het	86.9086	95.6522	79.6296	95.3807	44	2	43	11	4	36.3636
bgallagher-sentieon	INDEL	D1_5	map_l100_m2_e0	hetalt	94.6463	91.6667	97.8261	89.7092	44	4	45	1	0	0.0000
asubramanian-gatk	SNP	ti	tech_badpromoters	het	98.8506	97.7273	100.0000	48.1928	43	1	43	0	0
bgallagher-sentieon	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_51to200	hetalt	93.4783	87.7551	100.0000	25.8621	43	6	43	0	0
bgallagher-sentieon	INDEL	D1_5	map_l100_m1_e0	hetalt	94.5055	91.4894	97.7273	89.3462	43	4	43	1	0	0.0000
bgallagher-sentieon	INDEL	D6_15	func_cds	*	100.0000	100.0000	100.0000	55.2083	43	0	43	0	0
bgallagher-sentieon	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	98.8506	100.0000	97.7273	77.7778	43	0	43	1	1	100.0000
astatham-gatk	INDEL	D16_PLUS	map_l100_m1_e0	het	86.6603	93.4783	80.7692	95.8031	43	3	42	10	4	40.0000
astatham-gatk	INDEL	D1_5	map_l100_m1_e0	hetalt	95.5556	91.4894	100.0000	90.5495	43	4	43	0	0
astatham-gatk	INDEL	D6_15	func_cds	*	100.0000	100.0000	100.0000	56.1224	43	0	43	0	0
astatham-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	98.8506	100.0000	97.7273	77.5510	43	0	43	1	1	100.0000
astatham-gatk	INDEL	I1_5	map_l100_m2_e1	hetalt	97.7273	95.5556	100.0000	89.3827	43	2	43	0	0
anovak-vg	INDEL	*	tech_badpromoters	*	66.4036	56.5789	80.3571	44.5545	43	33	45	11	10	90.9091
anovak-vg	INDEL	D16_PLUS	HG002complexvar	hetalt	0.0000	17.4089	0.0000	0.0000	43	204	0	0	0
anovak-vg	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_51to200	het	31.2083	26.2195	38.5417	39.6226	43	121	74	118	98	83.0508
anovak-vg	INDEL	I6_15	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	67.0246	87.7551	54.2169	78.5530	43	6	45	38	31	81.5789
asubramanian-gatk	INDEL	D6_15	segdup	hetalt	93.4783	87.7551	100.0000	90.3587	43	6	43	0	0
asubramanian-gatk	INDEL	I16_PLUS	HG002compoundhet	het	80.8415	91.4894	72.4138	94.0574	43	4	21	8	8	100.0000
asubramanian-gatk	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	homalt	95.7366	95.5556	95.9184	83.9869	43	2	47	2	1	50.0000
asubramanian-gatk	INDEL	I1_5	map_l100_m2_e1	hetalt	96.6292	95.5556	97.7273	90.1345	43	2	43	1	0	0.0000
asubramanian-gatk	INDEL	I6_15	segdup	hetalt	97.7273	95.5556	100.0000	90.1149	43	2	43	0	0
bgallagher-sentieon	INDEL	D6_15	segdup	hetalt	93.4783	87.7551	100.0000	90.0463	43	6	43	0	0
bgallagher-sentieon	INDEL	I1_5	map_l100_m2_e1	hetalt	97.7273	95.5556	100.0000	88.3152	43	2	43	0	0
hfeng-pmm1	INDEL	D1_5	map_l100_m1_e0	hetalt	95.5556	91.4894	100.0000	90.8316	43	4	43	0	0
hfeng-pmm1	INDEL	D6_15	func_cds	*	100.0000	100.0000	100.0000	50.0000	43	0	43	0	0
hfeng-pmm1	INDEL	D6_15	segdup	hetalt	93.4783	87.7551	100.0000	90.7328	43	6	43	0	0
hfeng-pmm1	INDEL	I1_5	map_l100_m2_e1	hetalt	97.7273	95.5556	100.0000	89.7375	43	2	43	0	0
hfeng-pmm1	INDEL	I6_15	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	98.8506	97.7273	100.0000	75.1445	43	1	43	0	0
hfeng-pmm1	SNP	*	map_l100_m2_e1	hetalt	100.0000	100.0000	100.0000	78.2828	43	0	43	0	0
hfeng-pmm1	SNP	ti	tech_badpromoters	het	98.8506	97.7273	100.0000	44.1558	43	1	43	0	0
hfeng-pmm1	SNP	tv	map_l100_m2_e1	hetalt	100.0000	100.0000	100.0000	78.2828	43	0	43	0	0
hfeng-pmm2	SNP	*	map_l100_m2_e1	hetalt	100.0000	100.0000	100.0000	78.5000	43	0	43	0	0
hfeng-pmm2	SNP	ti	tech_badpromoters	het	98.8506	97.7273	100.0000	46.2500	43	1	43	0	0
hfeng-pmm2	SNP	tv	map_l100_m2_e1	hetalt	100.0000	100.0000	100.0000	78.5000	43	0	43	0	0
hfeng-pmm3	INDEL	D16_PLUS	map_l100_m1_e0	het	90.3904	93.4783	87.5000	94.1889	43	3	42	6	2	33.3333
jlack-gatk	INDEL	D6_15	func_cds	*	100.0000	100.0000	100.0000	57.8431	43	0	43	0	0
jlack-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	98.8506	100.0000	97.7273	76.7196	43	0	43	1	1	100.0000
jlack-gatk	INDEL	I16_PLUS	HG002compoundhet	het	61.9313	91.4894	46.8085	90.8382	43	4	22	25	17	68.0000
hfeng-pmm2	INDEL	D1_5	map_l100_m1_e0	hetalt	95.5556	91.4894	100.0000	90.8898	43	4	43	0	0
hfeng-pmm2	INDEL	D6_15	func_cds	*	100.0000	100.0000	100.0000	53.7634	43	0	43	0	0
hfeng-pmm2	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	100.0000	100.0000	100.0000	76.6304	43	0	43	0	0
hfeng-pmm2	INDEL	D6_15	segdup	hetalt	93.4783	87.7551	100.0000	90.6318	43	6	43	0	0
hfeng-pmm2	INDEL	I1_5	map_l100_m2_e1	hetalt	97.7273	95.5556	100.0000	89.7619	43	2	43	0	0

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge