PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
35401-35450 / 86044 show all | |||||||||||||||
| bgallagher-sentieon | INDEL | D6_15 | map_l150_m2_e0 | het | 97.8723 | 100.0000 | 95.8333 | 93.8540 | 46 | 0 | 46 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 93.5774 | 90.1961 | 97.2222 | 94.2215 | 46 | 5 | 35 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l250_m2_e1 | homalt | 97.8723 | 100.0000 | 95.8333 | 94.7598 | 46 | 0 | 46 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | segdup | hetalt | 97.8723 | 95.8333 | 100.0000 | 95.6881 | 46 | 2 | 47 | 0 | 0 | ||
| astatham-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 96.8421 | 93.8776 | 100.0000 | 26.9841 | 46 | 3 | 46 | 0 | 0 | ||
| astatham-gatk | INDEL | D1_5 | map_l250_m0_e0 | * | 92.9293 | 100.0000 | 86.7925 | 97.3827 | 46 | 0 | 46 | 7 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D6_15 | map_l125_m0_e0 | * | 98.9247 | 97.8723 | 100.0000 | 93.9394 | 46 | 1 | 46 | 0 | 0 | ||
| astatham-gatk | INDEL | D6_15 | map_l150_m2_e0 | het | 97.8723 | 100.0000 | 95.8333 | 93.9547 | 46 | 0 | 46 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 93.5774 | 90.1961 | 97.2222 | 94.2308 | 46 | 5 | 35 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l250_m2_e1 | homalt | 97.8723 | 100.0000 | 95.8333 | 94.8718 | 46 | 0 | 46 | 2 | 2 | 100.0000 | |
| astatham-gatk | INDEL | I1_5 | segdup | hetalt | 97.8723 | 95.8333 | 100.0000 | 96.0338 | 46 | 2 | 47 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 89.5537 | 92.0000 | 87.2340 | 85.8859 | 46 | 4 | 41 | 6 | 3 | 50.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l100_m2_e0 | het | 86.3481 | 95.8333 | 78.5714 | 95.8854 | 46 | 2 | 44 | 12 | 4 | 33.3333 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l250_m0_e0 | * | 93.8776 | 100.0000 | 88.4615 | 97.3537 | 46 | 0 | 46 | 6 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.4382 | 90.1961 | 99.0991 | 85.5280 | 46 | 5 | 110 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I6_15 | segdup | homalt | 98.9247 | 97.8723 | 100.0000 | 92.8349 | 46 | 1 | 46 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | map_l150_m2_e1 | het | 97.0055 | 97.8723 | 96.1538 | 91.2014 | 46 | 1 | 50 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 89.9500 | 88.4615 | 91.4894 | 71.1656 | 46 | 6 | 43 | 4 | 4 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l100_m0_e0 | * | 61.3333 | 44.6602 | 97.8723 | 88.9412 | 46 | 57 | 46 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 77.6371 | 75.4098 | 80.0000 | 77.2727 | 46 | 15 | 48 | 12 | 9 | 75.0000 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 84.5899 | 76.6667 | 94.3396 | 70.0565 | 46 | 14 | 50 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | INDEL | * | segdup | hetalt | 51.6497 | 35.3846 | 95.5882 | 96.8649 | 46 | 84 | 65 | 3 | 3 | 100.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l100_m2_e0 | het | 88.9670 | 95.8333 | 83.0189 | 96.8187 | 46 | 2 | 44 | 9 | 4 | 44.4444 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 96.8421 | 93.8776 | 100.0000 | 25.8065 | 46 | 3 | 46 | 0 | 0 | ||
| ckim-vqsr | INDEL | D1_5 | map_l250_m0_e0 | * | 88.4615 | 100.0000 | 79.3103 | 98.1481 | 46 | 0 | 46 | 12 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D6_15 | map_l125_m0_e0 | * | 96.8421 | 97.8723 | 95.8333 | 94.9045 | 46 | 1 | 46 | 2 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D6_15 | map_l150_m2_e1 | het | 95.8333 | 97.8723 | 93.8776 | 95.5616 | 46 | 1 | 46 | 3 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | segdup | * | 97.8723 | 97.8723 | 97.8723 | 96.4635 | 46 | 1 | 46 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l250_m2_e1 | homalt | 98.9247 | 100.0000 | 97.8723 | 95.2716 | 46 | 0 | 46 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 90.5425 | 92.0000 | 89.1304 | 86.4706 | 46 | 4 | 41 | 5 | 2 | 40.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l250_m0_e0 | * | 94.8454 | 100.0000 | 90.1961 | 97.6023 | 46 | 0 | 46 | 5 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l150_m2_e0 | het | 98.9247 | 100.0000 | 97.8723 | 94.2260 | 46 | 0 | 46 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 93.5774 | 90.1961 | 97.2222 | 94.4012 | 46 | 5 | 35 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | segdup | hetalt | 97.8723 | 95.8333 | 100.0000 | 96.0963 | 46 | 2 | 47 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l100_m2_e0 | * | 56.4417 | 39.6552 | 97.8723 | 91.1488 | 46 | 70 | 46 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I6_15 | map_l100_m2_e1 | * | 56.4417 | 39.6552 | 97.8723 | 91.2639 | 46 | 70 | 46 | 1 | 1 | 100.0000 | |
| ckim-isaac | SNP | * | map_siren | hetalt | 72.4409 | 56.7901 | 100.0000 | 72.4551 | 46 | 35 | 46 | 0 | 0 | ||
| ckim-isaac | SNP | tv | map_siren | hetalt | 72.4409 | 56.7901 | 100.0000 | 72.4551 | 46 | 35 | 46 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 90.5425 | 92.0000 | 89.1304 | 86.2687 | 46 | 4 | 41 | 5 | 2 | 40.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l250_m2_e1 | homalt | 95.7447 | 97.8261 | 93.7500 | 95.5140 | 45 | 1 | 45 | 3 | 1 | 33.3333 | |
| egarrison-hhga | INDEL | I6_15 | segdup | homalt | 97.8261 | 95.7447 | 100.0000 | 91.4773 | 45 | 2 | 45 | 0 | 0 | ||
| egarrison-hhga | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 78.1345 | 68.1818 | 91.4894 | 92.2056 | 45 | 21 | 43 | 4 | 3 | 75.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 74.8782 | 61.6438 | 95.3488 | 77.1277 | 45 | 28 | 41 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l150_m2_e0 | het | 96.9444 | 97.8261 | 96.0784 | 91.1458 | 45 | 1 | 49 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | segdup | * | 95.7890 | 95.7447 | 95.8333 | 93.4426 | 45 | 2 | 46 | 2 | 1 | 50.0000 | |
| ckim-isaac | INDEL | D6_15 | segdup | homalt | 93.7500 | 90.0000 | 97.8261 | 86.1862 | 45 | 5 | 45 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l125_m0_e0 | * | 97.8261 | 95.7447 | 100.0000 | 94.1634 | 45 | 2 | 45 | 0 | 0 | ||
| dgrover-gatk | INDEL | I16_PLUS | HG002compoundhet | het | 85.1501 | 95.7447 | 76.6667 | 93.8650 | 45 | 2 | 23 | 7 | 7 | 100.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 84.6939 | 45 | 0 | 45 | 0 | 0 | ||
| dgrover-gatk | INDEL | I1_5 | map_l250_m2_e1 | homalt | 96.7742 | 97.8261 | 95.7447 | 95.1093 | 45 | 1 | 45 | 2 | 2 | 100.0000 | |